Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0461 ATGCCCTACCCCTACCCCTACCCCAACAAGAGACTAGCCCTCAACCCCATCGACGCCTGCTGGCGTACTAACCCCAACTGGGCCGCCAACCGCCGCGCCTTGGCCAACTGCGCAGTCGGGTACGGCAAAGACGCCATCGGAGGCAAATTCGGGTCAATCTACGTCGTCACCGACCCGTCCGACGACCCGGAATATCCGGAGCCTGGAACGCTGCGTTACGGGGTGATCCAAACGCAGCCGTTATGGATTGTATTTGCAAAGGACATGGTGATCACGCCCAAAAGAGAGCTGATGGTGAACAGCTTCAAGACCATCGACGGGCGAGGGGCCAAAGTGGAGATTGCCAATGGGCCATGCATTACTATACAAAACGTGAGCCATGTCATAATTCATGGGATCAGCATCCATGACTGCAAGCCTGGGAAGCCTGGGCGCGTGAGGAGCAGCGTGAACCACTGCGGTGAGCGCCAAGTGTCTGATGGAGACGCCATTTCTATATTCAGTTCTTCGCATATTTGGATCGACCATTGCTCTTTGGCTCGCTGCACTGATGGGCTGATCGACGTCATTCATGCTTCCACTGCTGTCACCATTTCCAACAATTACTTCACTCAGCATGACAAAGTGATCCTTCTTGGGCACAATGACAAATATACAGCTGATAGAATCATGAGAGTCACCGTAGCTTTCAATCGTTTTGGCGATGGACTTGTTCAAAGAATGCCCAGAGTGAGACATGGGTATGCCCATGTTGCCAATAATTGGTACAACAAATGGCAAATGTACGCTGTGGGTGGCAGTGCAGATCCAACAATCTTCAGCCAAGGAAACTACTTCATGGCTCCTGATGATGCAGTCTCAAAGCAGGTTACAAAGAGAGAGGTTTATGCGAGTGGATGGAAGAATTGGAAATGGAGGTCTTCAAATGATGTGTTTTTGAATGGGGCTTATTTTATCCCATCTGGTTGGGGAACTTGTACGCCATTCTACACTCGAGCTCAGTCATTTGCTGTGGCTCATGGCTCTTTGGTTCCTCTTTTGACTAATAGCGCTGGCGCTTTGAGTTGTGCTGTTGGTAAAGCTTGTTGA 1089 50.6 MPYPYPYPNKRLALNPIDACWRTNPNWAANRRALANCAVGYGKDAIGGKFGSIYVVTDPSDDPEYPEPGTLRYGVIQTQPLWIVFAKDMVITPKRELMVNSFKTIDGRGAKVEIANGPCITIQNVSHVIIHGISIHDCKPGKPGRVRSSVNHCGERQVSDGDAISIFSSSHIWIDHCSLARCTDGLIDVIHASTAVTISNNYFTQHDKVILLGHNDKYTADRIMRVTVAFNRFGDGLVQRMPRVRHGYAHVANNWYNKWQMYAVGGSADPTIFSQGNYFMAPDDAVSKQVTKREVYASGWKNWKWRSSNDVFLNGAYFIPSGWGTCTPFYTRAQSFAVAHGSLVPLLTNSAGALSCAVGKAC 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4038334 4039995 - Maker00011877 Lcy1g0461 622373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0461 362 Gene3D - 14 355 IPR012334 -
Lcy1g0461 362 PANTHER PECTATE LYASE 18-RELATED 13 359 IPR045032 GO:0030570(InterPro)
Lcy1g0461 362 SMART amb_all 88 285 IPR002022 -
Lcy1g0461 362 PRINTS Pollen allergen Amb family signature 96 112 IPR018082 -
Lcy1g0461 362 PRINTS Pollen allergen Amb family signature 160 181 IPR018082 -
Lcy1g0461 362 PRINTS Pollen allergen Amb family signature 60 85 IPR018082 -
Lcy1g0461 362 PRINTS Pollen allergen Amb family signature 240 259 IPR018082 -
Lcy1g0461 362 PRINTS Pollen allergen Amb family signature 333 356 IPR018082 -
Lcy1g0461 362 PRINTS Pollen allergen Amb family signature 262 281 IPR018082 -
Lcy1g0461 362 PRINTS Pollen allergen Amb family signature 37 54 IPR018082 -
Lcy1g0461 362 PRINTS Pollen allergen Amb family signature 303 327 IPR018082 -
Lcy1g0461 362 Pfam Pectate lyase 95 279 IPR002022 -
Lcy1g0461 362 SUPERFAMILY Pectin lyase-like 15 353 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0461 Lcy-Chr1:4038334 Lcy5g2168 Lcy-Chr5:44640219 6.14E-157 dispersed
Lcy1g0461 Lcy-Chr1:4038334 Lcy5g2043 Lcy-Chr5:43440215 1.71E-206 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0461 K01728 - csv:101210816 646.736