Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0468 ATGGATGGTCCTAGTGGAAGTTCTTCTGGTATGATGAATTTTGGAGATCAAAACAATAATGGGTTGTGTTCCATGATGATGATGATGCCTTTAATGTCCTCTCACCAACACCAAAACCACCACGATGGAGATGCATGTAGTTCATTTCTTCCTCTTCCTCCTCCTCCTAATTACAACAACAACAACAACAACAACACTTCTAACCCTATTTGTTACTTCATGGACGAGAACAACAACAACAACAACGAGGGTAATAATGCAAATTCTTCTTCTTCTTCTTCTTCTGAAGTGAAGGCTAAAATCATGGCTCATCCCCACTACCATCGCCTTCTCGCTGCCTACGTCAATTGCCGTAAGGTGGGGGCGCCGCCGGAAGTGGTGGCGAGGCTTGAAGAAGCGTGTGCATCTGCAGCATCGATGAATGGTACGTCTTGTACGGGCTGTATTGGTGAAGATCCGGCGCTTGATCAGTTCATGGAAGCTTATTGTGAGATGCTCACCAAATATGAACAAGAACTTTCTAAACCCTTTAGGGATGCCATGCTTTTTCTTCAACGAATCGAGTGCCAATTCAAAGCCCTCTCTATTTCCTCCTCCGATGCTGGTGAATTTCTAACATGA 621 44.44 MDGPSGSSSGMMNFGDQNNNGLCSMMMMMPLMSSHQHQNHHDGDACSSFLPLPPPPNYNNNNNNNTSNPICYFMDENNNNNNEGNNANSSSSSSSEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVARLEEACASAASMNGTSCTGCIGEDPALDQFMEAYCEMLTKYEQELSKPFRDAMLFLQRIECQFKALSISSSDAGEFLT 206
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 4080190 4083723 - Maker00011907 Lcy1g0468 622380
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0468 206 SMART KNOX1_2 95 139 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy1g0468 206 SMART KNOX2_2 145 196 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy1g0468 206 Pfam KNOX1 domain 97 135 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Lcy1g0468 206 MobiDBLite consensus disorder prediction 34 98 - -
Lcy1g0468 206 MobiDBLite consensus disorder prediction 59 98 - -
Lcy1g0468 206 PANTHER FUSED COMPOUND LEAF 1 74 198 - -
Lcy1g0468 206 Pfam KNOX2 domain 148 194 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0468 Lcy-Chr1:4080190 Lcy7g0162 Lcy-Chr7:1454864 6.22E-25 dispersed
Lcy1g0468 Lcy-Chr1:4080190 Lcy4g0524 Lcy-Chr4:6300644 5.86E-42 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0468 - - - 0.0