Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0478 ATGGCGACCTCTTGTTTCGGTTCACTTTGCATTCGGAAATCAAAGAGCAAGCCCTTGTCAACCCCTTCCTCATTGAAATCCCAGATGAATTCTGAAATGGAAAACATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCGATGATCCTAGAGTCTGAAAATGTGGAAACTTGGGAGACATCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAGCTCTTCATCGGAAACAAATTTGCCTCCGGTGCTCACAGTCGAATATACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGGATTCCAAACCAAAAGGAGGAAACAAGAGCCAAACTTGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCGCCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATACTGAGGTTAGCTCTTGATATATCAAGAGGAATGGAATATCTTCATTCTCAAGGAGTAATCCACAGAGACCTCAAATCAAACAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTAGCAGATTTCGGAACCTCATGCCTCGAAACACAGTGTCGAGAATCAAAAGGGAACATGGGAACTTACAGATGGATGGCGCCGGAGATGATTAAAGAGAAGCCTTACACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTCACTACGGCTCTGCTTCCCTTTCAAGGGATGACCCCCGTGCAGGCCGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCGCCATTGCCGGCGAGTTGTCAGCCGGCGTTAGCCCACCTGATAAAGCGGTGTTGGGCGGCGAACCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCTTTGGAGAAATACGACGAGTGTGTGAAAGAGGGTCTTCCACTTGCACACCATAGAAGATTGGTAAACCGAAACGCCATTATTGACCGCTTGAAAGCTTGCGCCTCAACCAGCTCCTCAATACCTGTACATGCCTGA 1122 46.7 MATSCFGSLCIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIDRLKACASTSSSIPVHA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4194078 4197195 + Maker00012097 Lcy1g0478 622390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0478 373 CDD STKc_MAP3K-like 83 327 - -
Lcy1g0478 373 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0478 373 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0478 373 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0478 373 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0478 373 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0478 373 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0478 373 SMART serkin_6 76 337 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0478 373 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Lcy1g0478 373 PANTHER SERINE-THREONINE PROTEIN KINASE 55 331 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy1g0478 373 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
Lcy1g0478 373 Pfam Protein tyrosine and serine/threonine kinase 79 329 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0478 373 SUPERFAMILY Protein kinase-like (PK-like) 51 327 IPR011009 -
Lcy1g0478 373 FunFam serine/threonine-protein kinase HT1 159 352 - -
Lcy1g0478 373 Gene3D Transferase(Phosphotransferase) domain 1 159 353 - -
Lcy1g0478 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0342 Lcy-Chr1:3064777 Lcy1g0478 Lcy-Chr1:4194078 5.29E-102 dispersed
Lcy1g0478 Lcy-Chr1:4194078 Lcy5g2226 Lcy-Chr5:45283082 2.20E-126 dispersed
Lcy1g0478 Lcy-Chr1:4194078 Lcy5g2069 Lcy-Chr5:43806326 6.20E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65629 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0478 - - - 0.0