Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0478 | ATGGCGACCTCTTGTTTCGGTTCACTTTGCATTCGGAAATCAAAGAGCAAGCCCTTGTCAACCCCTTCCTCATTGAAATCCCAGATGAATTCTGAAATGGAAAACATGGAAAGGAGAAGATTTGATAGTTTGGAATCGTGGTCGATGATCCTAGAGTCTGAAAATGTGGAAACTTGGGAGACATCAAAGGAGGATCAGGAGGAGTGGACAGCTGATCTATCTCAGCTCTTCATCGGAAACAAATTTGCCTCCGGTGCTCACAGTCGAATATACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTGAAGATGGTGAGGATTCCAAACCAAAAGGAGGAAACAAGAGCCAAACTTGAGCAACAGTTCAAGTCTGAAGTTGCCTTGCTTTCTCGTCTCTTTCATCCCAACATAGTTCAGTTCATTGCAGCCTGTAAAAAGCCGCCTGTATACTGCATAATTACAGAGTATATGTCACAAGGAACTCTGAGGATGTATCTTAACAAGAAAGAGCCATATTCACTCTCAACAGAAACAATACTGAGGTTAGCTCTTGATATATCAAGAGGAATGGAATATCTTCATTCTCAAGGAGTAATCCACAGAGACCTCAAATCAAACAACTTGCTTCTAAACGATGAAATGAGAGTAAAAGTAGCAGATTTCGGAACCTCATGCCTCGAAACACAGTGTCGAGAATCAAAAGGGAACATGGGAACTTACAGATGGATGGCGCCGGAGATGATTAAAGAGAAGCCTTACACTCGCAAAGTTGATGTGTACAGCTTTGGGATTGTGCTGTGGGAGCTCACTACGGCTCTGCTTCCCTTTCAAGGGATGACCCCCGTGCAGGCCGCCTTTGCCGTCGCCGAGAAGAATGAGAGGCCGCCATTGCCGGCGAGTTGTCAGCCGGCGTTAGCCCACCTGATAAAGCGGTGTTGGGCGGCGAACCCGTCGAAGCGGCCGGATTTCAGCGACATTGTGGTGGCTTTGGAGAAATACGACGAGTGTGTGAAAGAGGGTCTTCCACTTGCACACCATAGAAGATTGGTAAACCGAAACGCCATTATTGACCGCTTGAAAGCTTGCGCCTCAACCAGCTCCTCAATACCTGTACATGCCTGA | 1122 | 46.7 | MATSCFGSLCIRKSKSKPLSTPSSLKSQMNSEMENMERRRFDSLESWSMILESENVETWETSKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQKEETRAKLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETQCRESKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWAANPSKRPDFSDIVVALEKYDECVKEGLPLAHHRRLVNRNAIIDRLKACASTSSSIPVHA | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4194078 | 4197195 | + | Maker00012097 | Lcy1g0478 | 622390 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0478 | 373 | CDD | STKc_MAP3K-like | 83 | 327 | - | - | |
Lcy1g0478 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 238 | 248 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g0478 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 154 | 167 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g0478 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 301 | 323 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g0478 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 192 | 210 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g0478 | 373 | PRINTS | Tyrosine kinase catalytic domain signature | 257 | 279 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g0478 | 373 | ProSiteProfiles | Protein kinase domain profile. | 76 | 349 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g0478 | 373 | SMART | serkin_6 | 76 | 337 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g0478 | 373 | FunFam | Serine/threonine-protein kinase isoform 1 | 66 | 158 | - | - | |
Lcy1g0478 | 373 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 55 | 331 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Lcy1g0478 | 373 | Gene3D | Phosphorylase Kinase; domain 1 | 65 | 158 | - | - | |
Lcy1g0478 | 373 | Pfam | Protein tyrosine and serine/threonine kinase | 79 | 329 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g0478 | 373 | SUPERFAMILY | Protein kinase-like (PK-like) | 51 | 327 | IPR011009 | - | |
Lcy1g0478 | 373 | FunFam | serine/threonine-protein kinase HT1 | 159 | 352 | - | - | |
Lcy1g0478 | 373 | Gene3D | Transferase(Phosphotransferase) domain 1 | 159 | 353 | - | - | |
Lcy1g0478 | 373 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 198 | 210 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0342 | Lcy-Chr1:3064777 | Lcy1g0478 | Lcy-Chr1:4194078 | 5.29E-102 | dispersed | |
Lcy1g0478 | Lcy-Chr1:4194078 | Lcy5g2226 | Lcy-Chr5:45283082 | 2.20E-126 | dispersed | |
Lcy1g0478 | Lcy-Chr1:4194078 | Lcy5g2069 | Lcy-Chr5:43806326 | 6.20E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65629 | None | None | None | None | Lcy | PK |
Pathway information
