Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0511 ATTTCAGTTCAGTTGGTGGATGCACTGGGTGGTAGATTGGACATATCGGCATTTTGTTCGGACAGATCGCAGGCTATGAAACACTCCCTTGCTGTTTCAGCCTTTCAGGCTGTCGGTTTGGTAGAAAGGCTCTGGGCCGGGCTTATGGCTAGAGCCCATGAACGGTCTGCATCGCCTTATCTTCTGGTTTTGTTTCTCGCATCTGGGTCGCGACCTGGCTTTGGATCTGTGATGAGCCTTATGGCCTCAATTGCTGGTTCCAAAGCTTCCTCAAATCAACCACAAAGAACAGCCAATGGTGAAATGGCTAATGGGAAGGATGCCGGGCCCTTGCCTCCGCAGATTTCAAAGTTAAGTAAACCTGAATCAGTTACTTCTGACCAGTCTAAATCAGTAAAGAGTATCTCAAAGCAGGATAAGGAAATTTCTTCCGACAAAAAGTTACCAGTATCGAATCAAAATGGATCTGCTAAGTCGTTGACTGAGAAATTTAACTTCAGCATTTCGTCACCTGGTCTGAAACAAACATCAACTGAAGTAGATTCCCCTCACAATGAAGCTAAATGCTCACCTGGAAGCTCACTAGATCAAGAGAAGAAAACATCAGAATATGGAAGTGTAAAGAGCAGTTCTTTTTCCGCCAAAGTAAGTGATGGGACTAGCAGCCTTGCCAAGACCAGTGGAAGCGCCAAGGTTAGCGACCATGGTAACTTTGTTGAGAGTGGCAAGAGCAGTATATGTAGAGGGAGCACGAGCAGTGATGTAAGCGATGAGAGCTCTTGCAGTAGTTTTAGTAGTAGTATCAGTAAACCTCACAAAGCAAATGATTTGAGATGGGAGGCCATTCAAGTTGTTCGTGCAAAAGATGGGGCCATGGGATTAGGTCATTTTAGACTTCTGAAGAAGTTGGGTTGTGGGGATATTGGGAGTGTTTATCTCTCTGAGTTAAGTGGAACCAAATGCCATTTTGCAATGAAGGTTATGGATAAAAATACTCTAGCGAGTCGTAAAAAATTGCTTCGTGCACAGACAGAAAGAGAAATACTTCAGTCTCTTGATCACCCCTTCCTTCCAACGTTATACACCCACTTTGAGACAGAAAAATTCTCATGCTTGGTGATGGAGTTCTGCCCTGGAGGAGACTTGCACACTCTAAGGCAGAGGCAACCAGGGAAGCATTTTCCTGAGCAGGCAGTGAAGTATGAGAATGTTGCACTTAGGAATGATACCCTAGGCTTCATGTTTTATTCTGATTATCTGTTCCATACATCTCCTGTCTTTTTATTCTATGTAGCAGAGGTTCTTCTTGCACTGGAATACCTGCATATGCTTGGGATTGTGTACCGTGATCTTAAGCCAGAAAATGTCCTTGTGAGGGAAGATGGCCACATAATGCTTTCAGATTTTGACCTATCTCTCCGTTGTGCTGTTAGTCCGACACTTGTCAAAAATCTCTCTGCAGAGTCTGAGGCTTTAAGAAAGAACACAGGTTACTGCGTGCAGCCTGCTTGCATTGAGCCTTCCTGCATCCAACCATCTTGTGTAGTTCCTACAACCTGCTTCTCACCACGCCTCTTTTCTAGCAAGTCAAAGAAGGAACGGAAACCCAAAACTGAAATGGGAAATCAAGTCAGCCCATTGCCTGAGCTCATTGCAGAACCAACTGATGCCCGATCCATGTCTTTTGTTGGAACTCATGAGTACTTGGCACCTGAGATCATCAAGGGTGAAGGCCATGGAAGTGCTGTAGATTGGTGGACTTTTGGAATTTTTCTATATGAGCTACTATTTGGTAAAACTCCTTTTAAGGGGTCTGGAAATCGAGCTACGCTATTCAACATTGTCGGTCAGCCACTAAGGTTTCCAGATGCACCAGTTGTGAGTTTTGCTGCAAAGGATCTGATAAGGGGATTGCTAGTGAAGGAGCCTCAACACAGATTGGCTTATAAACGTGGAGCAACTGAGATCAAGCAGCATCCTTTCTTTGAAGGTGTGAACTGGGCATTAATACGTTGTGCTACACCTCCCGAAATCCCAAGGCCAGTTGAGATTGAGAGAATACCACATGCAGTGGCATCAACCAGTGAAAAGGCCGCTGCTGTTGCAGCAGCTGCAGATAAAAAAGCTTCCGATAATTATCTCGAGTTCGATTTCTTTTAG 2160 44.63 ISVQLVDALGGRLDISAFCSDRSQAMKHSLAVSAFQAVGLVERLWAGLMARAHERSASPYLLVLFLASGSRPGFGSVMSLMASIAGSKASSNQPQRTANGEMANGKDAGPLPPQISKLSKPESVTSDQSKSVKSISKQDKEISSDKKLPVSNQNGSAKSLTEKFNFSISSPGLKQTSTEVDSPHNEAKCSPGSSLDQEKKTSEYGSVKSSSFSAKVSDGTSSLAKTSGSAKVSDHGNFVESGKSSICRGSTSSDVSDESSCSSFSSSISKPHKANDLRWEAIQVVRAKDGAMGLGHFRLLKKLGCGDIGSVYLSELSGTKCHFAMKVMDKNTLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKYENVALRNDTLGFMFYSDYLFHTSPVFLFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKNLSAESEALRKNTGYCVQPACIEPSCIQPSCVVPTTCFSPRLFSSKSKKERKPKTEMGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNIVGQPLRFPDAPVVSFAAKDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPRPVEIERIPHAVASTSEKAAAVAAAADKKASDNYLEFDFF 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4446560 4455339 - Maker00011836 Lcy1g0511 622423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0511 719 CDD STKc_phototropin_like 296 685 - -
Lcy1g0511 719 FunFam Serine/threonine-protein kinase OXI1 417 477 - -
Lcy1g0511 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 446 458 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0511 719 Gene3D Transferase(Phosphotransferase) domain 1 427 473 - -
Lcy1g0511 719 Gene3D Transferase(Phosphotransferase) domain 1 556 680 - -
Lcy1g0511 719 Pfam Protein kinase domain 298 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0511 719 Pfam Protein kinase domain 559 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0511 719 FunFam Serine/threonine-protein kinase AGC1-7 555 680 - -
Lcy1g0511 719 SUPERFAMILY Protein kinase-like (PK-like) 272 688 IPR011009 -
Lcy1g0511 719 FunFam Serine/threonine-protein kinase D6PK-like 295 380 - -
Lcy1g0511 719 MobiDBLite consensus disorder prediction 171 261 - -
Lcy1g0511 719 PANTHER FLIPPASE KINASE 1-RELATED 149 694 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Lcy1g0511 719 ProSiteProfiles Protein kinase domain profile. 297 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0511 719 Gene3D Phosphorylase Kinase; domain 1 291 412 - -
Lcy1g0511 719 SMART serkin_6 297 662 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0511 719 MobiDBLite consensus disorder prediction 118 132 - -
Lcy1g0511 719 MobiDBLite consensus disorder prediction 88 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0165 Lcy-Chr10:2253453 Lcy1g0511 Lcy-Chr1:4446560 2.80E-220 dispersed
Lcy11g2128 Lcy-Chr11:44806097 Lcy1g0511 Lcy-Chr1:4446560 1.02E-208 dispersed
Lcy1g0511 Lcy-Chr1:4446560 Lcy1g2134 Lcy-Chr1:29645105 3.91E-173 dispersed
Lcy1g0511 Lcy-Chr1:4446560 Lcy5g1341 Lcy-Chr5:31986784 1.21E-281 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65630 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0511 K08286 - csv:101209748 1080.86