Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0545 ATGTTGCTGGTTTACTATTTGTGTTTGAGTTTGTTGTGGGGTAAATCGTGGGCAGCTCCGGCCGGCGGTGATGGCACCACGAGGGAGCTTGATCAGACTCCGACGTGGGCTGTTGCCGGTGTTTGTGCTATTATCATCATTATTTCTATTGCCCTGGAGAAACTCCTCCATAAAGTTGGAACGTGGCTCACGGACAAGCACAAGAAAGCTCTTTTTGAAGCTTTGGAGAAGGTTAAAGCTGAGCTGATGATTCTGGGTTTCATTTCACTGCTCCTCACCTTTGGGCAGAACTATATCATTAAAATCTGCATTCCCACAGGGGTTGCAAACACGATGTTACCGTGTGCTGGCAAAGGGGACAAAGTGGAAAAAGAATTGGGTGCAGCTGATGAAGGCGAACATCATCGACGACTTCTATGGTATGAACGTAGGTTCCTAGCTGCTGCTGGTGGTGCTGTTAGTTGCAAGGATGGTCATGTGCCGCTTATATCTATCTCGGGTTTGCATCAGTTGCACTTATTTATCTTCTTCTTAGCCGTATTTCATGTAGTATACAGTGCTATCACAATGATGCTTGGGAGGCTAAAGATTCGAGGTTGGAAGGCATGGGAGCAGGAGACCTCAACTCACAATTATGAGTTCTCAAATGATAATGCACGATTCAGGCTTACTCATGAAACGTCATTTGTGAAAGCCCACACAAGTTTTTGGACAAAACTTCCTATCTTCTTTTATATAGTAAGTAAAGGATGCTTCTTCCGACAATTTTTCAGGTCCGTTGGTAAGGCTGACTACTTGGCGTTGCGTAATGGATTCATCGCTGTTCATCTAGCTCCAGGAAGTAAATTTGACTTTCAAAAATATATTAAAAGGTCTCTGGAAGATGACTTCAAGATAATTGTGGGAGTGAGTCCCGTGCTTTGGGCATCATTTGTTGTCTTCTTGCTCATAAATGTTTACGGTACATTTTCTGATCCAAATTACGCTCTTTCAAAGTCCATATTTCCGAATATTATCCTGGCTGTTGGAACAAAGCTTCAAGGAATTATGACAAAAATGGCTCTTGAAATTACAGAAAGACATGCTGTTGTCCAAGGAATTCCTCTTGTTCAGGCATCGGATAAATATTTTTGGTTTGGCAAGCCTCAGCTGGTTCTTTATCTCATCCACTTTGCCTTATTTTCGAATGCGTTCCAAATAACGTACTTCTTCTGGATTTGGTATTCCTTTGGGCTCAAATCCTGCTTCCATACCGATTTCAAGCTCGCAATTATAAAAGTCGGTCTCGGCTATATTACTCTTCCATTGTATGCTCTTGTGACTCAGCATAAATTTTCTGTCTTGTGGGACATGGCTGATTCGGTGGCTTTGCAGATGGGTACGCGTATGAAGAAGTCGATTTTCGATGAACAAACATCGAAGGCCCTGAAGAAGTGGCACATGGCTGTTAAGAAGCGCCGTGGGAAGTCCCCAACCCGAACCCTGGGGAGCCCAAATGCTTCACCAATGCATCCATCATCTGGATACGCAGCATTGCATCGTTTCAAGACCACAGGTCACTCAAACAGATCATCCATGTATGATGAGAATGAGGCGTCTGATTACGAAGCTGATTCATTGTCGCCTAAAGTACCAACTGCGAATTTTACGATTAGAGTAGAACGTGGTGATGAACATCAAACTGAAATAATCGAATCCCAGCATTCAGAAAAAAGGAATGAAGACGATTTCTCATTTGCTAAGGCTGGACCAACGAAAGGACCATGA 1767 43.35 MLLVYYLCLSLLWGKSWAAPAGGDGTTRELDQTPTWAVAGVCAIIIIISIALEKLLHKVGTWLTDKHKKALFEALEKVKAELMILGFISLLLTFGQNYIIKICIPTGVANTMLPCAGKGDKVEKELGAADEGEHHRRLLWYERRFLAAAGGAVSCKDGHVPLISISGLHQLHLFIFFLAVFHVVYSAITMMLGRLKIRGWKAWEQETSTHNYEFSNDNARFRLTHETSFVKAHTSFWTKLPIFFYIVSKGCFFRQFFRSVGKADYLALRNGFIAVHLAPGSKFDFQKYIKRSLEDDFKIIVGVSPVLWASFVVFLLINVYGTFSDPNYALSKSIFPNIILAVGTKLQGIMTKMALEITERHAVVQGIPLVQASDKYFWFGKPQLVLYLIHFALFSNAFQITYFFWIWYSFGLKSCFHTDFKLAIIKVGLGYITLPLYALVTQHKFSVLWDMADSVALQMGTRMKKSIFDEQTSKALKKWHMAVKKRRGKSPTRTLGSPNASPMHPSSGYAALHRFKTTGHSNRSSMYDENEASDYEADSLSPKVPTANFTIRVERGDEHQTEIIESQHSEKRNEDDFSFAKAGPTKGP 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4704078 4709241 - Maker00012373 Lcy1g0545 622457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0545 588 MobiDBLite consensus disorder prediction 520 588 - -
Lcy1g0545 588 MobiDBLite consensus disorder prediction 552 579 - -
Lcy1g0545 588 Pfam Mlo family 28 512 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy1g0545 588 PANTHER MLO-LIKE PROTEIN 1 25 545 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Lcy1g0545 588 MobiDBLite consensus disorder prediction 484 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0545 K08472 - - csv:101212923 960.674
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0545 Lcy-Chr1:4704078 Lcy7g0665 Lcy-Chr7:6142794 1.77E-104 dispersed
Lcy13g2270 Lcy-Chr13:41607802 Lcy1g0545 Lcy-Chr1:4704078 4.36E-204 transposed
Lcy1g0545 Lcy-Chr1:4704078 Lcy6g2364 Lcy-Chr6:48434105 3.09E-220 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy10g1948 . 9 510 MLO family AT5G53760 67.9 2.0e-196 682.9
Lcy9g1288 . 95 464 MLO family AT5G53760 68.8 1.5e-135 480.7
Lcy11g0298 . 10 475 MLO family AT3G45290 54.5 7.4e-139 491.5
Lcy10g1948 . 9 509 MLO family AT1G26700 66.7 2.9e-189 659.1
Lcy9g1288 . 95 464 MLO family AT1G26700 65.6 7.3e-132 468.4
Lcy11g0297 . 67 576 MLO family AT2G39200 60.5 4.1e-178 622.1
Lcy7g0665 . 4 413 MLO family AT2G39200 54.7 1.4e-141 500.7
Lcy8g1891 . 8 465 MLO family AT2G39200 55.5 2.8e-134 476.5
Lcy11g0297 . 67 456 MLO family AT1G61560 64.5 7.1e-148 521.2
Lcy13g2270 . 10 413 MLO family AT1G61560 50.5 8.2e-112 401.4
Lcy7g0665 . 4 330 MLO family AT1G61560 53.2 2.0e-110 396.7
Lcy1g0545 . 28 430 MLO family AT1G61560 51.9 3.5e-110 396.0
Lcy8g1891 . 8 376 MLO family AT1G61560 51.0 9.4e-100 361.3
Lcy1g0545 . 10 496 MLO family AT2G17430 59.1 5.4e-156 548.5
Lcy6g2364 . 56 548 MLO family AT2G17430 58.9 4.3e-153 538.9
Lcy13g2270 . 2 477 MLO family AT2G17430 59.1 4.3e-153 538.9
Lcy6g2364 . 33 634 MLO family AT2G17480 58.1 7.7e-180 627.9
Lcy1g0545 . 28 584 MLO family AT2G17480 59.7 2.9e-179 625.9
Lcy13g2270 . 12 462 MLO family AT2G17480 61.6 4.1e-157 552.4
Lcy11g0297 . 67 503 MLO family AT2G17480 51.3 1.6e-121 434.1
Lcy13g2270 . 12 378 MLO family AT1G42560 62.2 5.2e-129 458.4
Lcy1g0545 . 28 394 MLO family AT1G42560 58.6 1.0e-116 417.5
Lcy6g2364 . 56 447 MLO family AT1G42560 51.6 1.2e-106 384.0
Lcy8g0111 . 17 187 MLO family AT4G24250 54.4 3.5e-43 173.3
Lcy6g2364 . 54 447 MLO family AT5G65970 60.2 9.8e-133 471.1
Lcy1g0545 . 8 395 MLO family AT5G65970 63.2 4.9e-132 468.8
Lcy13g2270 . 9 378 MLO family AT5G65970 60.4 2.0e-122 436.8
Lcy13g2270 . 2 535 MLO family AT2G33670 60.9 6.8e-177 617.8
Lcy1g0545 . 28 508 MLO family AT2G33670 56.6 4.4e-144 508.8
Lcy6g2364 . 56 530 MLO family AT2G33670 54.1 1.1e-134 477.6
Lcy11g0297 . 122 546 MLO family AT1G11310 61.8 7.7e-152 534.6
Lcy7g0665 . 60 435 MLO family AT1G11310 54.2 4.0e-124 442.6
Lcy13g0561 . 1 429 MLO family AT4G02600 58.1 1.7e-154 543.5
Lcy6g0576 . 3 614 MLO family AT1G11000 62.2 3.6e-206 715.3
Lcy13g0561 . 1 429 MLO family AT4G02600 58.1 1.7e-154 543.5
Lcy11g0297 . 122 546 MLO family AT1G11310 61.8 7.7e-152 534.6
Lcy7g0665 . 60 435 MLO family AT1G11310 54.2 4.0e-124 442.6
Lcy11g0298 . 10 475 MLO family AT3G45290 54.5 7.4e-139 491.5
Lcy6g0576 . 3 614 MLO family AT1G11000 62.2 3.6e-206 715.3
Lcy13g2270 . 2 535 MLO family AT2G33670 60.9 6.8e-177 617.8
Lcy1g0545 . 28 508 MLO family AT2G33670 56.6 4.4e-144 508.8
Lcy6g2364 . 56 530 MLO family AT2G33670 54.1 1.1e-134 477.6
Lcy11g0297 . 67 456 MLO family AT1G61560 64.5 7.1e-148 521.2
Lcy13g2270 . 10 413 MLO family AT1G61560 50.5 8.2e-112 401.4
Lcy7g0665 . 4 330 MLO family AT1G61560 53.2 2.0e-110 396.7
Lcy1g0545 . 28 430 MLO family AT1G61560 51.9 3.5e-110 396.0
Lcy8g1891 . 8 376 MLO family AT1G61560 51.0 9.4e-100 361.3
Lcy1g0545 . 10 496 MLO family AT2G17430 59.1 5.4e-156 548.5
Lcy6g2364 . 56 548 MLO family AT2G17430 58.9 4.3e-153 538.9
Lcy13g2270 . 2 477 MLO family AT2G17430 59.1 4.3e-153 538.9
Lcy6g2364 . 33 634 MLO family AT2G17480 58.1 7.7e-180 627.9
Lcy1g0545 . 28 584 MLO family AT2G17480 59.7 2.9e-179 625.9
Lcy13g2270 . 12 462 MLO family AT2G17480 61.6 4.1e-157 552.4
Lcy11g0297 . 67 503 MLO family AT2G17480 51.3 1.6e-121 434.1
Lcy13g2270 . 12 378 MLO family AT1G42560 62.2 5.2e-129 458.4
Lcy1g0545 . 28 394 MLO family AT1G42560 58.6 1.0e-116 417.5
Lcy6g2364 . 56 447 MLO family AT1G42560 51.6 1.2e-106 384.0
Lcy6g2364 . 54 447 MLO family AT5G65970 60.2 9.8e-133 471.1
Lcy1g0545 . 8 395 MLO family AT5G65970 63.2 4.9e-132 468.8
Lcy13g2270 . 9 378 MLO family AT5G65970 60.4 2.0e-122 436.8
Lcy10g1948 . 9 510 MLO family AT5G53760 67.9 2.0e-196 682.9
Lcy9g1288 . 95 464 MLO family AT5G53760 68.8 1.5e-135 480.7
Lcy11g0297 . 67 576 MLO family AT2G39200 60.5 4.1e-178 622.1
Lcy7g0665 . 4 413 MLO family AT2G39200 54.7 1.4e-141 500.7
Lcy8g1891 . 8 465 MLO family AT2G39200 55.5 2.8e-134 476.5
Lcy8g0111 . 17 187 MLO family AT4G24250 54.4 3.5e-43 173.3
Lcy10g1948 . 9 509 MLO family AT1G26700 66.7 2.9e-189 659.1
Lcy9g1288 . 95 464 MLO family AT1G26700 65.6 7.3e-132 468.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000765 3 4 3 4 2 3 4 3 3 3 2 3 4 3 3 4 2 3 4 3 3 3 3 3 3 3 2 6 2 2 93