Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0548 ATGAAATTCGCCACACGGGTCTTGAAATGGCTATTGTTATCGATCGAAATGGAGGGTGCGATTGTGAATGTGCGCACTGTGCACAGTGACAGAGCAATATTTGTAGCTCAGGGCTTAAGGTATGATGTTATTGAATCTTTAAGTTTATGTAGCTTAATAGTGGATTCTGTGAATGCGGTTCTAGTTGGTTTTTCCTCAATTGGAGATGGTACAAATGTATCCACGAGACCCGATGTTGTCAACATTGGAGCTTTATTCTCTTTCCGTTCTATTATAGGCAGAGTTGGAAAAATTGCCGTAGAAGCTGCCGTCGAGGATGTAAATTCTGATCCATCCATCCTGGGGGGGACGAAGCTGAAACTCAGTTTACATGATACCAATTACAGCGGATTTTTGGGCATCATTGAGTCCTTGCGTTTCATGGAGACTAAGACTATGGCCATAATTGGTCCTCAAAACTCTGTAACTGCTCATGTAATATCTCATATTGCAAATGAGCTCCAAGTCCCTCTATTGTCATTTTCAGCAACAGATCCCACACTGTCGTCACTTCAGTTTCCTTTCTTTATCAGAACTTCACAGAATGATCTGTATCAGATGGCTGCAGTAGCTGAAATAGTTGACTACTTTCAATGGAGAGAGGTGATTGCCATTTTTGTTGATGATGATCATGGTAGAAACGGCATTGCTGCATTGGGGGATCAACTTAATGAGAAACGATGTAAGATCTCATTGAAAGTACCATTGAGGCCTGATGCAAGTCGAGACGAGGTCACTGATGCACTTGTTAAGGTGGCTTTGACGGAGTCTCGGATACTTGTTGTTCACACTTATGAGACCACAGGTATGGTGGTGCTGAATGTGGCTCAGTATCTTGGATTGACTGAACCTGGGTATGTGTGGATAGCCACTAACTGGCTTTCGTTGCTACTCGACACGAATTCTCCTCTTCCTTCTGCTTCTATGGAAAATATTCAAGGACTCGTTGCTTTGCGGCTTTATACACCAGATTCTGCACTCAAAAGGAAATTTGTTTCGAGGTGGACCAATTTGACAAATGGAAAATCATCAAGTGGCCCACTCGGACTGAGTACTTACGGATTATATGCTTATGATACTGTTTGGATGCTTGCTCATGCAATAAATTCATTTCTTAATGAAGGTGGAAATCTTTCATTTTCAAATCTTTCCAAGTCAAGTGGGACTGGTGTTGGGGCTTTGAATTTGAACTCTATGAGCATCTTCAATGGTGGGAAGACACTACTTCACAAAATTTTGGACGTCAATTTTACTGGCATAACAGGCCCAGTTGAGTTCACTCCAGACAGGGACTTAATTCGCCCTGCATTTGAAGTCATCAATATAATCGGCACAGGGGAAAGGAGACTTGGTTATTGGTCTAACTATTCTGGCTTGTCGATTGTTCCTCCTGAAACCCTTTACTCGAAACCACCTAATCGATCCAGTTCAAATCAAAAGCTATACGATGTGGTATGGCCTGGACAAGCAACAAAGAAACCTCGAGGGTGGGCATTTCCAAGCAGTGGAAGACACTTGAGAATCGGAGTCCCTAGACGAGTCAGTTATCAAGAATTTGTCTCACAAGTAGAAGGAACTGACATGTTCAGTGGCTACTGCGTTGATGTCTTCACTGCAGCAATCAACATATTGCCTTACGCAGTCCCATATAAGTTAATTCCTTTTGGGGATGGCCATACTAATCCAAGTGCAACCGAGCTTGTTCGTCTAATCACAACCGGAGTCTTTGATGCAGCAATAGGTGACATTGCAATCATCACAAACCGAACCAGGATGGCAGACTTTACACAACCGTATATCGAGTCTGGCTTAGTAGTCATAGCCCCAGTCAAGAAGTTGAATTCTAGTGCTTGGGCCTTTTTACGGCCGTTCACTCCAAAGATGTGGTGTATTACTGCTGTTTCTTTTATTGTAGTAGGAGCAGTTGTTTGGATTTTGGAGCATAGGATAAATGATGATTTTCGTGGACCTCCGAAGAGACAAGTTATTACTATTTTATGGTTCAGCTTTTCAACTCTATTCTTCTCTCATCGGGAAAACACAGTCAGTACCCTCGGTCGCTTCGTGCTGCTCATATGGTTATTTGTTGTTCTTATTATCAACTCGAGCTACACTGCAAGCTTGACCTCTATCCTTACAGTTCAACAACTTTCTTCTCCTGTCAAAGGGATTGAAACTTTGGTTTCAAACACTGACCCAATTGGCTACCAGCAGGGTTCATTCGCTCGAAACTACTTGATTGAGGAACTCGGCATTCACGAGTCGAGACTTGTTCCCCTCATCTCAGCAGAACACTATGTTAAAGCCTTGAATGATGGCCCAAAGAAGAATGGTGTTGCTGCTATTATCGATGAGCGAGCATATGTAGAGCTCTTCCTTTCAACCCATTGCGAATACAGTATTGTTGGCCAAGAGTTCACCAAAAATGGGTGGGGATTTTTGTCATCTGATGATGATACACTATACCAACAGGCTTTCCAGCGCGACTCTCCTTTAGCAGTTGACATGTCCACAGCTATTCTAAAACTGTCAGAAAATGGGGATCTTCAAAGGATCCATGATAAATGGTTGATGAAAAGTGCCTGCACATCACAGGCCTCCAAATTTGAGGTGGATCGACTTCAGCTCAATAGCTTTTGGGGACTTTTTCTAATATGTGGATTAGCCTGCTTGCTCGCTCTATTGATATACCTCTTTCTAACGGTGCGCCAATATAGTGAGCATTACTCTGAAGAACTCGGGTCTTCTGAGCAAACTTCCCGATCTGCAAGCCTGCAGAGATTTCTTTCTTTTGCAGATGAAAAGGAAGACGTCTTCAGGAGTCGATCTAAGCGAAAACAGATGCAGGAGGCTTCAATTAGAAGCGTGAATGGAGAAAATTCAACAGGCAGTTCAAGAAAATTTGGCCATGGTGATGCTAATGGTATTGATGCTGGAGAATAG 2982 42.82 MKFATRVLKWLLLSIEMEGAIVNVRTVHSDRAIFVAQGLRYDVIESLSLCSLIVDSVNAVLVGFSSIGDGTNVSTRPDVVNIGALFSFRSIIGRVGKIAVEAAVEDVNSDPSILGGTKLKLSLHDTNYSGFLGIIESLRFMETKTMAIIGPQNSVTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSQNDLYQMAAVAEIVDYFQWREVIAIFVDDDHGRNGIAALGDQLNEKRCKISLKVPLRPDASRDEVTDALVKVALTESRILVVHTYETTGMVVLNVAQYLGLTEPGYVWIATNWLSLLLDTNSPLPSASMENIQGLVALRLYTPDSALKRKFVSRWTNLTNGKSSSGPLGLSTYGLYAYDTVWMLAHAINSFLNEGGNLSFSNLSKSSGTGVGALNLNSMSIFNGGKTLLHKILDVNFTGITGPVEFTPDRDLIRPAFEVINIIGTGERRLGYWSNYSGLSIVPPETLYSKPPNRSSSNQKLYDVVWPGQATKKPRGWAFPSSGRHLRIGVPRRVSYQEFVSQVEGTDMFSGYCVDVFTAAINILPYAVPYKLIPFGDGHTNPSATELVRLITTGVFDAAIGDIAIITNRTRMADFTQPYIESGLVVIAPVKKLNSSAWAFLRPFTPKMWCITAVSFIVVGAVVWILEHRINDDFRGPPKRQVITILWFSFSTLFFSHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIETLVSNTDPIGYQQGSFARNYLIEELGIHESRLVPLISAEHYVKALNDGPKKNGVAAIIDERAYVELFLSTHCEYSIVGQEFTKNGWGFLSSDDDTLYQQAFQRDSPLAVDMSTAILKLSENGDLQRIHDKWLMKSACTSQASKFEVDRLQLNSFWGLFLICGLACLLALLIYLFLTVRQYSEHYSEELGSSEQTSRSASLQRFLSFADEKEDVFRSRSKRKQMQEASIRSVNGENSTGSSRKFGHGDANGIDAGE 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4731970 4736462 - Maker00012409 Lcy1g0548 622460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0548 993 MobiDBLite consensus disorder prediction 963 981 - -
Lcy1g0548 993 FunFam Glutamate receptor 630 760 - -
Lcy1g0548 993 SUPERFAMILY Periplasmic binding protein-like II 497 873 - -
Lcy1g0548 993 MobiDBLite consensus disorder prediction 948 962 - -
Lcy1g0548 993 PIRSF IGluLR_plant 48 988 IPR017103 -
Lcy1g0548 993 Gene3D - 819 877 - -
Lcy1g0548 993 CDD PBP1_GABAb_receptor_plant 81 476 IPR044440 -
Lcy1g0548 993 Gene3D - 511 629 - -
Lcy1g0548 993 MobiDBLite consensus disorder prediction 948 993 - -
Lcy1g0548 993 Gene3D - 630 757 - -
Lcy1g0548 993 Pfam Ligated ion channel L-glutamate- and glycine-binding site 534 622 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy1g0548 993 CDD GluR_Plant 519 870 - -
Lcy1g0548 993 SUPERFAMILY Periplasmic binding protein-like I 76 510 IPR028082 -
Lcy1g0548 993 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 93 109 - -
Lcy1g0548 993 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 370 382 - -
Lcy1g0548 993 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 153 181 - -
Lcy1g0548 993 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 80 953 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Lcy1g0548 993 Pfam Receptor family ligand binding region 98 457 IPR001828 -
Lcy1g0548 993 FunFam Glutamate receptor 514 630 - -
Lcy1g0548 993 SMART GluR_14 520 872 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Lcy1g0548 993 FunFam Glutamate receptor 195 350 - -
Lcy1g0548 993 FunFam Glutamate receptor 756 874 - -
Lcy1g0548 993 Gene3D - 98 447 - -
Lcy1g0548 993 Gene3D - 195 472 - -
Lcy1g0548 993 Pfam Ligand-gated ion channel 640 903 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0548 Lcy-Chr1:4731970 Lcy8g1444 Lcy-Chr8:41101731 0 dispersed
Lcy1g0548 Lcy-Chr1:4731970 Lcy13g1853 Lcy-Chr13:37477830 2.11E-68 wgd
Lcy1g0548 Lcy-Chr1:4731970 Lcy9g2339 Lcy-Chr9:47757741 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0548 K05387 - csv:101213408 1613.59