Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0554 ATGGCGTTTTCCGATGAGAACAATCCCAACTTGATCAAGCCCACTGGGTTTCTTCCAGGAGGAGGGTTGGAGAAGACTGGGAGGGCTTTTGGCCAGGAGATCAGTAGAATTAATAATCGAAGAGCTCTTAATGTTATTAATCAGAATTCTGTGGTGAATCAAGCTTACCCTTGTGTTGTTAACAAGAGAGTTCTCTCAGGAAAGCAAGAGATCTGTGAGAAGAAGCAGGTCGATCCATTCCATAGACCGATTACGAGGAAGTTTGCTGCTCAAATTGCGAGTAGTCAACAGCTTCATCAGCCACAAGAAAATAATAAGCCTAACTCATTTCTTACAAACTCAAATGCATTTGGACATTCCATATTTGTAGACGAGGATTGTAAAACAGCAGAAAATGACCATCCAGTTCCCATGTTCTTGGAGAAATCAGAACCATCATTGCCTCAAGAAGCAAGCCAAATGGAGGAGGTTGAGATGGAGGACATTGCAGAAGACGACGACCCGATAATCGACATCGATCGTGTCGATTCCGAGAACCCACTTGCCGTTGTCGACTATGTGGACGATCTCTACACACACTACAGAAAAATAGAGAATTCAAGCTGTGTTGCTCCAAATTACATGACAAAACAATTTGACATTAATGAAAAGATGAGAGCCATTCTAATTGACTGGCTTATAGAAGTGCATGACAAGTTTGATCTCATGGGAGAAACATTGTTTCTCACTGTGAATCTGATAGACAGATTTTTGTCACAAAAAACAGTTGTGAGAAAGAAGCTTCAGCTGGTTGGTTTGGTTTCTATGCTCTTAGCTTGCAAATATGAGGAAGTTTCTGTCCCTGTTGTGGGTGATTTGATTCTTATTTCTGATAAAGCTTACTCTAGAAAAGAAGTTCTTGAAATGGAGACAGTGATGCTCAACTGTCTGCAGTTCAACATGTCAGTTCCCACACCCTTTGTTTTCCTTCAAAGGTTCCTTAAAGCTGCTCAATCTGACAAAAAGCTCGAGCTAATGGCATTCTTCTTGATCGAGCTCTCGCTCGTGGAGTATGAAATGCTGAGATTTCCGCCCTCTCTGCTAGCAGCGGCGGCGACTTACACAGCTCAATGTACTCTCACCGGAGTCAGGGGGTGGAGCCGGACCTGCGAGTGGCATTCCAGCTACTCAGAAGATCAGCTCCTAGAATGCTCCAGACTGATGGTGGGATTCCACCAAAAGGCGGCGACCGGGAAGCTCACCGGAGTTCATCGGAAGTACTGTACATCAAAATTTAACTACACGGCAAAATGTGAACCTGCACATTTTCTTTTGCAGACTCAGCAATAG 1329 43.72 MAFSDENNPNLIKPTGFLPGGGLEKTGRAFGQEISRINNRRALNVINQNSVVNQAYPCVVNKRVLSGKQEICEKKQVDPFHRPITRKFAAQIASSQQLHQPQENNKPNSFLTNSNAFGHSIFVDEDCKTAENDHPVPMFLEKSEPSLPQEASQMEEVEMEDIAEDDDPIIDIDRVDSENPLAVVDYVDDLYTHYRKIENSSCVAPNYMTKQFDINEKMRAILIDWLIEVHDKFDLMGETLFLTVNLIDRFLSQKTVVRKKLQLVGLVSMLLACKYEEVSVPVVGDLILISDKAYSRKEVLEMETVMLNCLQFNMSVPTPFVFLQRFLKAAQSDKKLELMAFFLIELSLVEYEMLRFPPSLLAAAATYTAQCTLTGVRGWSRTCEWHSSYSEDQLLECSRLMVGFHQKAATGKLTGVHRKYCTSKFNYTAKCEPAHFLLQTQQ 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4776623 4779629 + Maker00012963 Lcy1g0554 622466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0554 442 SMART cyclin_7 224 308 IPR013763 -
Lcy1g0554 442 SMART cyclin_7 321 403 IPR013763 -
Lcy1g0554 442 PANTHER CYCLINS 160 421 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy1g0554 442 Pfam Cyclin, C-terminal domain 317 433 IPR004367 -
Lcy1g0554 442 FunFam G2/mitotic-specific cyclin-1 311 429 - -
Lcy1g0554 442 Gene3D - 189 429 - -
Lcy1g0554 442 PIRSF Cyclin_A_B_D_E 24 442 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Lcy1g0554 442 Pfam Cyclin, N-terminal domain 189 315 IPR006671 -
Lcy1g0554 442 SMART Cyclin_C_2 317 434 IPR004367 -
Lcy1g0554 442 SUPERFAMILY Cyclin-like 178 314 IPR036915 -
Lcy1g0554 442 ProSitePatterns Cyclins signature. 219 250 IPR048258 -
Lcy1g0554 442 Gene3D - 203 315 - -
Lcy1g0554 442 SUPERFAMILY Cyclin-like 316 434 IPR036915 -
Lcy1g0554 442 CDD CYCLIN_AtCycB-like_rpt1 177 312 - -
Lcy1g0554 442 FunFam G2/mitotic-specific cyclin 203 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0554 Lcy-Chr1:4776623 Lcy1g1775 Lcy-Chr1:18946357 1.88E-75 dispersed
Lcy1g0554 Lcy-Chr1:4776623 Lcy9g2319 Lcy-Chr9:47549657 2.49E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0554 K21777 - csv:101216622 800.816