Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0585 ATGGATTCCTGTATGCCTCAAGACAATGGCTCGCTGTTGGGGCTCGCCCCTGCAGAACAATCAATTCCCTACTGGAACAACAAGGCCGACAATGCATGGCAGCTCACGGCAGCCACCATGGTCGGCCTCCAAACCGTTCCGGGGCTGGTCATCCTCTACGGCAGCATGGTGAAGAAAAAATGGGCTGTCAACTCCGCCTTCATGGCCCTCTATGGCTTCGCTGCCGTGCTCGTCTGTTGGGTGTTGTGGGCACATCGTATGGCATTTGGTGACCGATTGTTCTGGATCGTCGGTAAGCCTGCCACAGCACTGTCTGAAAGCTACCTTCTTTCACCGTCTACACAAGGCTGCTTTCCAATGGCTGACTACGTGTTTTTCCAGTTCGCTTTCGCGGCCATTACTGTCGTGTTGCTTGCCGGGTCCTTGCTGGGAAGGATGAACTTTTGTGCATGGATGCTTTTTGTTCCAATGTGGCTAACTTTTTGTTACACTGTTGGGGCTTTCAGTATATGGGGGGGTGGGTTTATTCGGGATTACCTGATTGATTACGCCGGCGGCTATGTCATTCATCTTTCTTCTGGGGTGGCTGGTTTCACTGCTGCCTACTGGGTCGGGCCACGACACTCCCAGGACAGGCAAAACTTCCCACCAAACAACATACTGCACATGGTTGGTGGCGCGGGGTTTCTTTGGATGGGTTGGACTGGATTCAATGGAGGAGCTCCATTTGCAGCAGGTCAGATTACATCGCTAGCCATTTTGAACACACATGTCTGCACCGCAACAAGTCTCTTGATCTGGGTTTCAATGGACATCATAGTATACAAGAAAAGCTCTGTGATTGGTGCAGTTCAAGGGATTATCACTGGCCTTGTCTGCATCACTCCGGGTGCAGGGCTTGTGGATACAGTTGCAGCTGTGGTGATGGGCATTCTGGCTGGTTTGGTGCCATGGTACACCATGATGGTGCTGCATAGGAAGCTTGCATTCCTTCAATGTGTCGACGATACATTGGGCGTCTTCCACACACACGCAGTGGCTGGTTCCATGGGAGGACTCCTCACAGGTCTCTTTGCCAAACCCAGCCTTCTGAGAATGCTGTATCCGGATTCTCTATATGGTCCCGGCTTCCTATACGCCATATTTGATAGAAGGCTCAAAGATGGTCTCAAGCAAATTGGAATCCAGTTTGCCGGAGCAGTGTTTATTACTCTTTGGAATGCCGTCTTTACCAGCATTATCTGTTACCTGATTAGCCATATTGTTAAATTAAGGATGAAAGAAGAGGACCTGGAGATTGGTGACGATGCTGCTCATGGAGAAGAACCCTACGCATTGTGGGGCGACGGGGAGAAGATGCCATCCTCATTTCGTCTTCCGCACACCCCTAGGTTCCCTTCATTATGCATGCGGGATTAA 1419 50.74 MDSCMPQDNGSLLGLAPAEQSIPYWNNKADNAWQLTAATMVGLQTVPGLVILYGSMVKKKWAVNSAFMALYGFAAVLVCWVLWAHRMAFGDRLFWIVGKPATALSESYLLSPSTQGCFPMADYVFFQFAFAAITVVLLAGSLLGRMNFCAWMLFVPMWLTFCYTVGAFSIWGGGFIRDYLIDYAGGYVIHLSSGVAGFTAAYWVGPRHSQDRQNFPPNNILHMVGGAGFLWMGWTGFNGGAPFAAGQITSLAILNTHVCTATSLLIWVSMDIIVYKKSSVIGAVQGIITGLVCITPGAGLVDTVAAVVMGILAGLVPWYTMMVLHRKLAFLQCVDDTLGVFHTHAVAGSMGGLLTGLFAKPSLLRMLYPDSLYGPGFLYAIFDRRLKDGLKQIGIQFAGAVFITLWNAVFTSIICYLISHIVKLRMKEEDLEIGDDAAHGEEPYALWGDGEKMPSSFRLPHTPRFPSLCMRD 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4982309 4983956 + Maker00013180 Lcy1g0585 622497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0585 472 Gene3D Ammonium transporter AmtB like domains 11 447 IPR029020 -
Lcy1g0585 472 PRINTS Rhesus blood group protein signature 252 274 IPR002229 GO:0005886(InterPro)
Lcy1g0585 472 PRINTS Rhesus blood group protein signature 221 239 IPR002229 GO:0005886(InterPro)
Lcy1g0585 472 PRINTS Rhesus blood group protein signature 127 143 IPR002229 GO:0005886(InterPro)
Lcy1g0585 472 PRINTS Rhesus blood group protein signature 307 325 IPR002229 GO:0005886(InterPro)
Lcy1g0585 472 Pfam Ammonium Transporter Family 32 444 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy1g0585 472 PANTHER AMMONIUM TRANSPORTER MEP2 22 454 IPR001905 GO:0005886(PANTHER)|GO:0008519(PANTHER)|GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(PANTHER)|GO:0072488(InterPro)
Lcy1g0585 472 SUPERFAMILY Ammonium transporter 25 426 - -
Lcy1g0585 472 ProSitePatterns Ammonium transporters signature. 182 207 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lcy1g0585 472 NCBIfam ammonium transporter 30 444 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1756 Lcy-Chr13:36492595 Lcy1g0585 Lcy-Chr1:4982309 7.88E-140 dispersed
Lcy1g0585 Lcy-Chr1:4982309 Lcy5g0077 Lcy-Chr5:845300 7.67E-186 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0585 K03320 - csv:101218977 885.945