Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0587 ATGGCGGAAAGTTCAGAAGAGGTCTATCTCCATGGCGATCTCGACCTCAAAATCTTTGAGGCTAGCCAGTTGCCTAATATGGACATTATATCGGAGCGTCTTCGTCGTTGCTTCACTGCCTGTGGTACTCTCGACTACTCTGCCATTAAATCCGTCGGAACCAACTCCCGCTCTGCCGCCGGTGAGGGGAAAGTCCACCGCGGCCATGGAAAAATCATCACCAGCGACCCATATGTTACCGTCCGGGTCCCTCAAGCCACGGTCGCTCGGACTCGCGTCATAAAGAATTCCCAGAATCCCAATTGGAACGAGCATTTCGTTATCCCTCTTGCACAGAAAATGGCCGAGTTGGAATTCCAGGTGAAAGACGACGATGTCTTTGGCGCTGAAGTTATGGGGACGGTCAAATTCCCTGCTCAGACAATTGCCTCCGGCGAGACAATTAGCGGGTGGTTTCCTGTGCTTGGCTCAAATGGCAAGCCACCGAAGCCCGGTACATCACTCAGAGTCGAAATGAAGTTCACCTCGGTTGAAAAAAATCCGGTATATCGACACGGCATTGCAGGAGATCCTGAGCATAAGGGTGTGCGGCACACTTATTTTCCTGTCAGGAAAGGGAGCTCCGTGAGATTGTACCAAGATGCTCATGTGCCTGATGGGATGCTACCGCAGATTGAATTGGATGGAGGGAATGTTTATAGACAAGAAAAATGTTGGGAGGATATTTGCTATGCCATATCGGAGGCTCATCATATGATTTATATTGTCGGATGGTCGGTCTATCATAAGGTGAGGCTGGTTAGAGAGCCAAGCAGGCCGTTACCGCGAGGTGGGGATTTGACTCTTGGTGAACTGCTCAAATACAAATCAGAAGAGGGTGTTCGAGTTTTGATGATGGTTTGGGATGATAAGACTTCTCATGATAAGTTCTTCATCAACACGGCAGGATTGATGCAGACACATGACGAGGAAACCCGAAAATTTTTCAAGCATTCTTCTGTTATCTGTGTGCTCTCACCTCGCTATCCAAGTGGCAAGCTAAGTTATGTAAAACAAAAGGTTGTAGGGACTGTCTTTACACACCATCAAAAGTGTGTCCTTGTTGATACACAGGGATATGGTAATAATAGAAAGATAACTGCATTTCTTGGAGGTCTTGATCTCTGTGATGGTCGTTATGATACACCTGAGCATCGATTGTTCCATGGCCTTGACACAATATTCAAGGAGGATTTTCATAATCCTACAATTCCTCCTGGAACCAATGCTCCAAGGCAACCATGGCATGACTTGCACTGTCGGATTGATGGGCCAGCGGCATATGACTTGCTTATAAACTTTGAGCAACGTTGGAATAGAGCCACAAGATGGACAGAGTTTGGCCTACGGTGCAAGAGAATTTCTCACTGGCATGATGCTTTAATAAAGATAGAGCGCATATCATGGATACTAAGCCCTCACCTGACTGTCTTAGATGATGGTTCAATAAAAGTTCCAGAGGATGATCCTAAAGTATATGTTTCAAAGGAAGAAGATCCTGGGAACTGGCATGTTCAGATTTTTCGATCTATTGACTCTGGATCAGTAAAAGGATTTCCAAAAGATGTCCATCTCGCCGAGTCGCAGAACCTTGTATGTGCAAAAAACTTGGCTGTAGAGAAAAGCATTGAAATGGCATATATCCAGGCTATTAGATCGGCACAACATTTCATTTATATTGAAAATCAGTATTTTATTGGATCATCGTATGGATGGCCGGGATATAAAAATGCCGGGGCTGATAATCTCATTCCCATGGAGTTGGCCCTTAAGATTGCAAGCAAAATAAGAGCCAAGGAAAGATTTGTTGTATATATTATCATACCAATGTGGCCTGAGGGAGATCCGAAGAGTGGTCCCATGCAAGAGATTCTTTATTGGCAGGGACAAACAATGCAAATGATGTATGACATTGTTGCAAGTGAACTGAAGTCATCAGAGCAACCAGATTTGACTCCTCTAGACTATCTAAATTTCTACTGCCTTGGTAAACGGGAAGAAATTCCTGAGAATGGACCGACCACTGATGCTGCAACGGTATCTAATTCACTAAAACATAAACGGTTTATGATTTACGTTCATGCCAAGGGGATGATAGTAGATGATGAATATGTAATTGTTGGGTCTGCAAATATTAACCAAAGATCTATGGCTGGGTCGAAGGACACTGAGATAGCCATGGGTGCCTATCAGCCGCATCACACGTGGGAAAAGAATAAGAGACACCCACACGGTCAGATTTACGGGTACAGAATGTCGTTATGGAGCGAGCATCTCGGGATGCTCGATCCATGTTTTGAGGAGCCAGAAACTTTGGAATGTGTGAGAAGAGTCAATGAGATTGCTGAGGATAACTGGAAGCGATTCGCAGCAGATGAATTCACGACATTGCAGGGCCACCTTCTCAAGTATCCGGTGCTTGTGGACGGTGACGGGAAAGTCAATTCTCTGCCTGGACATGAAAACTTCCCTGATGTAGGGGGGAAGATAATAGGGTCTCATTCAACTGCAATTCCTGATGTTGTGACCACATAG 2574 45.14 MAESSEEVYLHGDLDLKIFEASQLPNMDIISERLRRCFTACGTLDYSAIKSVGTNSRSAAGEGKVHRGHGKIITSDPYVTVRVPQATVARTRVIKNSQNPNWNEHFVIPLAQKMAELEFQVKDDDVFGAEVMGTVKFPAQTIASGETISGWFPVLGSNGKPPKPGTSLRVEMKFTSVEKNPVYRHGIAGDPEHKGVRHTYFPVRKGSSVRLYQDAHVPDGMLPQIELDGGNVYRQEKCWEDICYAISEAHHMIYIVGWSVYHKVRLVREPSRPLPRGGDLTLGELLKYKSEEGVRVLMMVWDDKTSHDKFFINTAGLMQTHDEETRKFFKHSSVICVLSPRYPSGKLSYVKQKVVGTVFTHHQKCVLVDTQGYGNNRKITAFLGGLDLCDGRYDTPEHRLFHGLDTIFKEDFHNPTIPPGTNAPRQPWHDLHCRIDGPAAYDLLINFEQRWNRATRWTEFGLRCKRISHWHDALIKIERISWILSPHLTVLDDGSIKVPEDDPKVYVSKEEDPGNWHVQIFRSIDSGSVKGFPKDVHLAESQNLVCAKNLAVEKSIEMAYIQAIRSAQHFIYIENQYFIGSSYGWPGYKNAGADNLIPMELALKIASKIRAKERFVVYIIIPMWPEGDPKSGPMQEILYWQGQTMQMMYDIVASELKSSEQPDLTPLDYLNFYCLGKREEIPENGPTTDAATVSNSLKHKRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGSKDTEIAMGAYQPHHTWEKNKRHPHGQIYGYRMSLWSEHLGMLDPCFEEPETLECVRRVNEIAEDNWKRFAADEFTTLQGHLLKYPVLVDGDGKVNSLPGHENFPDVGGKIIGSHSTAIPDVVTT 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4994397 5001056 - Maker00013347 Lcy1g0587 622499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0587 857 PANTHER PHOSPHOLIPASE D 9 844 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lcy1g0587 857 Pfam C2 domain 74 153 IPR000008 -
Lcy1g0587 857 SMART pld_4 357 392 IPR001736 GO:0003824(InterPro)
Lcy1g0587 857 SMART pld_4 702 729 IPR001736 GO:0003824(InterPro)
Lcy1g0587 857 Gene3D Endonuclease Chain A 526 756 - -
Lcy1g0587 857 CDD C2_plant_PLD 8 175 - -
Lcy1g0587 857 PIRSF PLD_plant 1 857 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Lcy1g0587 857 Gene3D Endonuclease Chain A 226 467 - -
Lcy1g0587 857 FunFam Phospholipase D delta 229 473 - -
Lcy1g0587 857 Pfam Phospholipase D Active site motif 704 729 IPR001736 GO:0003824(InterPro)
Lcy1g0587 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 176 IPR035892 -
Lcy1g0587 857 Gene3D C2 domain 11 184 IPR035892 -
Lcy1g0587 857 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Lcy1g0587 857 Pfam Phospholipase D C terminal 777 846 IPR024632 -
Lcy1g0587 857 SMART C2_3c 13 151 IPR000008 -
Lcy1g0587 857 SUPERFAMILY Phospholipase D/nuclease 197 461 - -
Lcy1g0587 857 SUPERFAMILY Phospholipase D/nuclease 553 787 - -
Lcy1g0587 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 357 392 IPR001736 GO:0003824(InterPro)
Lcy1g0587 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 702 729 IPR001736 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0587 Lcy-Chr1:4994397 Lcy6g1997 Lcy-Chr6:42548569 7.44E-302 dispersed
Lcy12g0767 Lcy-Chr12:9870741 Lcy1g0587 Lcy-Chr1:4994397 8.97E-44 transposed
Lcy4g1814 Lcy-Chr4:44177311 Lcy1g0587 Lcy-Chr1:4994397 7.26E-32 transposed
Lcy1g0587 Lcy-Chr1:4994397 Lcy13g1878 Lcy-Chr13:37694548 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0587 K01115 - csv:101217251 1624.37