Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0591 ATGCAATTACAGGAGCCAGTTATCGGATTGAGGAGTTTTGCTGCTACGAATTGGATGTTATCCAGCTTGATGAACTTTCTGAGGGCTTGCTGGCTGCCGTCCTCGGACAACATCGTACACAGTGGTTCGGATTCAGCAGGCCGTCATGAAGGCCTACTATGGTACAAAGATATTGGACAGCATATGAATGGTGAATTTTCAATGGCTGTCGTCCAGGCCAATAACTTGCTTGAGGATCAGAGCCAGATCGAATCGGGTTCGTTGAGCTTACTTGAAACCGGGCCATATGGAACTTTTATTGGTGTCTATGATGGTCATGGTGGGCCTGAAGCGTCAAATTACGTATATGATAATCTTTTCCAGCATCTAAAAAGGTTCACCTCAGAACAACAATCAATGTCATCTGATGTGATAAAGAAAGCATTTCAAGCTACAGAGGAAGGGTTTATTTCTCTAGTGACTAAACAATGGACAATGAAGCCCCAAATTGCAGCTGTTGGTTCATGCTGCCTGGTGGGCGTGATCTGTGGTGGCACCCTTTACATAGCCAACCTTGGCGATTCCCGTGCTGTTCTGGGAAGGCTTGTTCGGGCAACTGAGGAGGTTATTGCCGTGCAGCTATCAGCAGAGCATAATGTGAGCATAGAATCTGTCAGAAGGGAGATGCATTCTCTGCACCCAGATGACTCGCATATAGTAGTTTTGAAGCATAATGTATGGCGAGTAAAGGGCTTAATACAGGTTTCCAGATCTATCGGTGATGCGTATCTAAAGAGGGCAGAATTCAACAAGGAACCCTTGTATGCTAAGTTTAGGCTTCGTGAACCATTCACTCGGCCAATATTGAGCTGCGAACCATCAATTTCGGTGCATGAACTTCAACCACATGATCAATTCATCATATTTGCCTCTGATGGCCTGTGGGAGCACATTAGCAATCAGCAGGCTGTGGATATTATTAGAAATCACCCGCACAATGGAAGTGCTAAGAGGTTGGTAAAAGCTGCTATGCAGGAAGCAGCCAAGAAACGAGAAATGCGATATTCAGATTTGAAGGAAATCGACCGTGGTGTCCGCCGCCATTTTCACGATGACATCACAGTCATAGTTGTATTTCTCGACTCAAATCTTGTGAGCAGAGCGAGCTCGGTCCGAGGCCCAACCACGTCTTTGAGAGGGAGTGGTGTTGTCTTACCAACAAAATCTCTAGCCCCTTGTGCCACACCTGCAGAACTTTAA 1239 45.92 MQLQEPVIGLRSFAATNWMLSSLMNFLRACWLPSSDNIVHSGSDSAGRHEGLLWYKDIGQHMNGEFSMAVVQANNLLEDQSQIESGSLSLLETGPYGTFIGVYDGHGGPEASNYVYDNLFQHLKRFTSEQQSMSSDVIKKAFQATEEGFISLVTKQWTMKPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRLVRATEEVIAVQLSAEHNVSIESVRREMHSLHPDDSHIVVLKHNVWRVKGLIQVSRSIGDAYLKRAEFNKEPLYAKFRLREPFTRPILSCEPSISVHELQPHDQFIIFASDGLWEHISNQQAVDIIRNHPHNGSAKRLVKAAMQEAAKKREMRYSDLKEIDRGVRRHFHDDITVIVVFLDSNLVSRASSVRGPTTSLRGSGVVLPTKSLAPCATPAEL 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5033129 5036552 - Maker00012619 Lcy1g0591 622503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0591 412 SMART PP2C_4 59 371 IPR001932 -
Lcy1g0591 412 FunFam Phosphatase 2C family protein 54 383 - -
Lcy1g0591 412 ProSitePatterns PPM-type phosphatase domain signature. 99 107 IPR000222 GO:0043169(InterPro)
Lcy1g0591 412 Gene3D - 55 383 IPR036457 -
Lcy1g0591 412 CDD PP2Cc 66 373 IPR001932 -
Lcy1g0591 412 SUPERFAMILY PP2C-like 74 374 IPR036457 -
Lcy1g0591 412 PANTHER PROTEIN PHOSPHATASE 58 372 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Lcy1g0591 412 ProSiteProfiles PPM-type phosphatase domain profile. 84 373 IPR001932 -
Lcy1g0591 412 Pfam Protein phosphatase 2C 98 342 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0591 Lcy-Chr1:5033129 Lcy3g0879 Lcy-Chr3:31657179 4.02E-207 dispersed
Lcy1g0591 Lcy-Chr1:5033129 Lcy6g2327 Lcy-Chr6:48069976 5.23E-218 wgd
Lcy1g0591 Lcy-Chr1:5033129 Lcy8g1268 Lcy-Chr8:39272682 3.00E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0591 K01102 - csv:101219696 739.954