Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0597 ATGGCTTCCTTTGCTGGGGCATTCTCACACTTCGCAACTCTTTTGCTGTCTATTCTGTCTTTGGGAAGTTCACTGAGCTTAGACTACTACGAGAAGACATGTCCCGGTGTCGACTTTATCGTTACTAAAGCTGTCAAGGAGGCAGCTTACAAAGACAAGACTGTTCCTGCTGCACTCCTCCGGATGCACTTTCATGACTGCTTTATAAGGGTAACATTTAGAATTATCATGTTTAGTGCTACTCCGTGTTTGACAAAACTAACCTGGCTTTGTTTGCTTGGGCAGGGTTGTGATGCATCTGTACTGCTGAACTCAGTAGGGAACAACGAAGCAGAGAAAGATGGGCCACCTAATTTGTCTTTGCACTCATTTTTTGTGATTGACAACGCGAAGAAAGAACTGGAATCCTATTGCCCCGGCGTTGTCTCTTGTGCTGATATCTTGGCTCTGGCTGCAAGGGATGCAGTTGTGCTTTCTGGAGGTCCAACATGGGATGTTCCTAAAGGAAGAAAGGATGGAAGGATATCAAAGGCTAGTGAAACAATACAGTTGCCATCTCCAAGCTTCAACATTTCTCAGCTGCAACAGAGCTTCTCCCAAAGGGGGTTATCCTTGGACGACCTGGTTGCTCTTTCAGGAGGCCACACCTTAGGATTTGCTCATTGCTCATCCTTTGAAGGTAGACTCCGCAACTTCAGTCCAGCCAGCAACGTCGACCCTGAAATGAATCCGTCCTTCGCAGCAAGTCTAAGAAACATGTGCCCAGTAAACAACAAGGCAAAAAATGCTGGCTCTAACATGGATACTTCTCCAACCACATTCGACAACAATTACTATAGACTGATACTCCAAAAGAAGGGCCTGTTTTCTGCTGATCAAGCTCTGCTCAACTTTCCCAAGACCAAGAATCTTGTTTATCAGTTTGCTAGCTCAAAGGAAGCTTTTAACCGTGCATTTGTTAATTCTATGATCAAGATGAGTAGCATCACTGGAGGTCAAGAGATCAGGAAGAATTGTAGGGCAGTGAACTAA 1032 44.96 MASFAGAFSHFATLLLSILSLGSSLSLDYYEKTCPGVDFIVTKAVKEAAYKDKTVPAALLRMHFHDCFIRVTFRIIMFSATPCLTKLTWLCLLGQGCDASVLLNSVGNNEAEKDGPPNLSLHSFFVIDNAKKELESYCPGVVSCADILALAARDAVVLSGGPTWDVPKGRKDGRISKASETIQLPSPSFNISQLQQSFSQRGLSLDDLVALSGGHTLGFAHCSSFEGRLRNFSPASNVDPEMNPSFAASLRNMCPVNNKAKNAGSNMDTSPTTFDNNYYRLILQKKGLFSADQALLNFPKTKNLVYQFASSKEAFNRAFVNSMIKMSSITGGQEIRKNCRAVN 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5097384 5098870 + Maker00013160 Lcy1g0597 622509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0597 343 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Haem peroxidase superfamily signature 267 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Haem peroxidase superfamily signature 207 222 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 Gene3D Peroxidase, domain 2 185 326 - -
Lcy1g0597 343 CDD secretory_peroxidase 28 342 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy1g0597 343 FunFam Peroxidase 185 326 - -
Lcy1g0597 343 Pfam Peroxidase 41 310 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Plant peroxidase signature 281 298 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Plant peroxidase signature 265 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Plant peroxidase signature 206 218 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Plant peroxidase signature 141 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Plant peroxidase signature 160 175 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Plant peroxidase signature 321 334 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 ProSitePatterns Peroxidases proximal heme-ligand signature. 207 217 IPR019793 -
Lcy1g0597 343 SUPERFAMILY Heme-dependent peroxidases 25 343 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 FunFam Peroxidase 28 199 - -
Lcy1g0597 343 Gene3D - 28 343 - -
Lcy1g0597 343 ProSiteProfiles Plant heme peroxidase family profile. 24 343 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0597 343 PANTHER PEROXIDASE 25-RELATED 26 339 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0597 Lcy-Chr1:5097384 Lcy6g0205 Lcy-Chr6:1839494 4.58E-108 dispersed
Lcy1g0597 Lcy-Chr1:5097384 Lcy13g1893 Lcy-Chr13:37882265 1.18E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0597 K00430 - csv:101217954 582.022