Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0629 ATGAAAACGCAGCAGACCTGGAAGCAGATAATATCGGCATCGAAGGAATCGAGCAATTTAAGGAGTGAACCAAACTGTGCGATGCGCGGCCTAAGACCATTCACGTTATTGGTTCGGGCCCGGGGCATCCTCGTGGTCGTGGCTCGTGGAGTGCACGATTTGGTGCTGGATTTTGTGATTTCCCTTTCTCTTTCTCTTTCTCTTTCTCTGTTGGACGAATCAGAGGAATTAAGCTCTGAGTTTTATTTACTCGCTGCTTTGCTCTGTGTAAGACCATTTTTTGTTTTTGGGATCGCCATGGAGCAGTGGAAGACTGGTGATTTCTCTCAATCTATTGTTGCAGCTGATTTAGTTCCTTCCTCGTCTCTTCAGCCGCAGCCTCTCTCTGTGTCCTCGAATCGCCACCATAACAGCCAGCTTCCTGAATCCAGGTTAAGAACAGATGCGGAAGTAAAAGATCCAATAGCAGTGAGAAAAATTCAGAAGGCAGATCGTGAAAAATTGAGGAGAGACAGACTGAATGAACACTTTCTTGAGCTAGGAAACACATTAGATCCAGATAGGCCCAAAAATGACAAGGCTACCATCCTTACAGACACCATCCAGATGCTGAAGGATTTAACTGCCGAAGTCAATAGATTGAAGGCTGACTATGAAGCTCTTTCTGAAGAATCACGTGAGCTAACTCAGGAAAAGAATGAGCTTAGAGAAGAGAAGGCTTCACTAAAATCAGATATTGAAAATCTAAATGCCCAGTATCAACAAAGACTGAGAGTCATGTTTCCCTGGGCTACAATGGATCCTTCAGTGGTTATGGGGCCCCCATATTCATACCCCGTTCCCGTTCCCGTTCCCCCAGGACCAATTCCCATGCATCCGTCATTGCAGCCCTTCACCTTCTTTGGCAATCAGAATCCTGGTGCTATTCCTAACCCCTGTTCGACGTTTGTCCCATATACTGCTGCTGCCAATCATCCGGTTGAACAGCCCTCTGCCCAATATGCGTCCAATTCACATGTCTCCAGCAAACAAGATTCCAGAAGTAAGTCATCAGATCAGCAAAGGCGTAGTAATGCAGAAAGATGCGACGAATCTAATGATGTAGCAACAGACCTTGAACTTAAGATGCCTGGATCTTCAACGCAACAGGATGCATCCTCTGGAAGTAAGAAAGGTAAGCAGTCACAGAGGAAAGAAAAAAGTGTCACCGATTGTAGTTCTTCGAGTAGGTTTTCTTCATCCCCAGTTCTTCAAGATAGCTCCTCTAACAGTGTTAGCGACATCCCGAAACAGAACAACTGA 1302 45.55 MKTQQTWKQIISASKESSNLRSEPNCAMRGLRPFTLLVRARGILVVVARGVHDLVLDFVISLSLSLSLSLLDESEELSSEFYLLAALLCVRPFFVFGIAMEQWKTGDFSQSIVAADLVPSSSLQPQPLSVSSNRHHNSQLPESRLRTDAEVKDPIAVRKIQKADREKLRRDRLNEHFLELGNTLDPDRPKNDKATILTDTIQMLKDLTAEVNRLKADYEALSEESRELTQEKNELREEKASLKSDIENLNAQYQQRLRVMFPWATMDPSVVMGPPYSYPVPVPVPPGPIPMHPSLQPFTFFGNQNPGAIPNPCSTFVPYTAAANHPVEQPSAQYASNSHVSSKQDSRSKSSDQQRRSNAERCDESNDVATDLELKMPGSSTQQDASSGSKKGKQSQRKEKSVTDCSSSSRFSSSPVLQDSSSNSVSDIPKQNN 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5400616 5405723 + Maker00013189 Lcy1g0629 622541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0629 433 SMART finulus 163 213 IPR011598 GO:0046983(InterPro)
Lcy1g0629 433 MobiDBLite consensus disorder prediction 124 138 - -
Lcy1g0629 433 MobiDBLite consensus disorder prediction 375 390 - -
Lcy1g0629 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983(InterPro)
Lcy1g0629 433 MobiDBLite consensus disorder prediction 331 433 - -
Lcy1g0629 433 Gene3D - 156 240 IPR036638 GO:0046983(InterPro)
Lcy1g0629 433 Pfam Helix-loop-helix DNA-binding domain 158 208 IPR011598 GO:0046983(InterPro)
Lcy1g0629 433 MobiDBLite consensus disorder prediction 345 370 - -
Lcy1g0629 433 PANTHER TRANSCRIPTION FACTOR BHLH121 121 431 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Lcy1g0629 433 CDD bHLH_AtILR3_like 162 236 - -
Lcy1g0629 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 227 IPR036638 GO:0046983(InterPro)
Lcy1g0629 433 MobiDBLite consensus disorder prediction 124 146 - -
Lcy1g0629 433 Coils Coil 197 252 - -
Lcy1g0629 433 MobiDBLite consensus disorder prediction 405 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0629 Lcy-Chr1:5400616 Lcy9g1226 Lcy-Chr9:36715435 2.42E-09 dispersed
Lcy9g0771 Lcy-Chr9:26112698 Lcy1g0629 Lcy-Chr1:5400616 9.11E-08 transposed
Lcy1g0629 Lcy-Chr1:5400616 Lcy8g1211 Lcy-Chr8:38484704 1.23E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19523 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0629 - - - 0.0