Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0648 ATGAAGCTTCTTCTCCTGTTATTCTTTCCGCTGCTGCTGCTCTCCGGCTGTTTCTTTTCCTCCTCCGCCGACACCAGCGCCCAAACCCTAGTGGAGATTCAGGCATTGATGTCCTTTAAGCTCAACCTTCATGATCCTCTTGCCGCATTGACCGGTTGGGATTCTTCCACCCCATTGGCGCCTTGTGACTGGCGGGGTGTTGTCTGTACCAGTAATCGAGTCACCGAGCTTCGTCTGCCTCGTCTTCAACTCGCCGGACGATTGACCGATCAGTTGGCTAACTTGCAGATGCTCCGGAAGTTGAGTATTCGATCCAATTTCTTCAATGGTACGATTCCTTCTTCTTTGTCCAAATGTGCGTTTCTGCGTTCGGTTTTCTTGCAGTACAACTCGTTTTCCGGTGGTCTTCCGGCGGAGTTTGGGAACTTGACTAATCTCCATGTTTTCAACGTGGCGGAGAATCGTCTCTCCGGCGTCATTCCCGGCGACCTTCCGAGGAGCCTGAAGTATCTCGATCTTTCGTCGAACGGATTCTCCGGTCAGATTCCGAGGAGCGTTGTGAATATGACGCAGCTTCAGGTTGTGAATCTCTCTTTCAATAGATTCGGCGGGGAGATTCCGGCGAGTTTCGGTGAGCTTCAACAGCTTCAACATCTCTGGCTCGACCATAATGTTTTAGAAGGGACGTTGCCTTCGGCTCTTGCGAATTGTTCTTCGCTCGTTCATTTGAGCGTTGAGGGAAATGCGCTTCAAGGCGTAATCCCGGCCGCCATTGGAGCTCTTCCGAATCTTCAAGTTATCTCGCTCTCGCAGAATAGCCTCACTGGTTCAGTTCCTTACTCCATGTTTTGCAATGTCTCAACGCATGCGCCGTCGCTTCGGATCGTTCAACTTGGATTTAATGCGTTCACGGACATTGTCAAACCTCAGATAGCGACGTGTTTTAGTGCTCTACAGGTACTCGATATCCAACACAATCAGATAAGGGGAGAGTTCCCCTTGTGGTTAACGGGCGTTACGACTTTGACAGTCTTGGATTTTTCTGTCAATGATTTTTCCGGCGATATTCCGCCTGGGATTGGGAATCTTTCGGGATTGCAAGAGCTTAAAATGGCGAATAATTCGTTCCACGGGGCGATTCCGTTAGAAATCAAGAACTGCGCCTCGATTTCTGTTATTGATTTGGAAGGGAATCGCTTAACCGGAGAGATTCCGCCGTTTTTGGGCTTTATGAGAGGTTTGAAACGGTTGTCTCTCGGTGGAAATCATTTTTCCGGCATGGTTCCGGCCAGTTTGGGAAATCTGTTGGAGCTTGAAATCTTGAATTTAGCTGACAATGGCTTGAATGGAACCCTTCCTCTTGAGCTAATGAAGCTTGGGAATTTAACGTCAATGGAACTCGGTGGGAACAAGTTTTCTGGTGAGTTTCCAATTGGTATTGGGAACCTTAGTCGCCTTGAGATTTTGAATCTAAGTGCTAACAGTCTCTCTGGGAAGATTCCGTCCAGTCTTGGCAATCTCTTCAAGCTAACAACTCTCGACTTGAGCAAACAGAATCTTTCTGGGGAGTTGCCGTTTGAGCTCTCTGGTTTGCCTAATTTACAGGTAATCGCTCTACAGGAGAACAAGCTATCTGGGAATGTCCCTGAAGGATTCAGTAGTTTGGTGGGTTTGCGCTATTTGAATCTAAGCTCTAATGGATTTTCCGGTCAAATTCCTTCGAATTATGGATTTCTTCGATCGCTTGTTTCATTGTCATTATCAAAGAATCACATTTCTGGGTCGATCCCTTCAGAGCTGGGGAACTGCTCTGATCTAGAAAGTTTGGAGGTCCGTTCAAATGCTCTTTCAGGCCAAATTCCGGCGGATCTTTCTCGTTTATTTCATCTGCAAGAGCTCGATTTGGGTAGGAATAATTTGACTGGCGAAATCCCTGAGGAGATCTCTAGTTGCTCGTCTTTAGAATCTCTCCTTCTGGATTCGAATCATCTTTCCGGTACCATACCGGAGTCGTTATCGGAGCTCTCGAACTTAACTAGGCTCGACCTCTCATCCAACAATTTGACTGGTGTTATTCCTGCTAATCTTAGCTCCATTACTGGATTGGTGAGCTTAAATGTCTCGAATAATGATCTAGAAGGTGAAATACCACCTCCTTTAGGCTCTAGATTCAACAGCTCATCTGTGTTTGCCAATAATTCTGACTTATGTGGGAAACCACTTGCTCGGAATTGTAAGGATACAGAGAAAAAAGACAGAATGAAGAGATTGATACTATTCATTGCAGTGGCCGCCAGTGGAGCTTGCCTCTTGACTTTGTGTTGCTGCTTCTACATTTTCAGCCTGTTGAGATGGCGGAAGAGACTCAAAGAGAGAGCGTCTGGAGAGAAGAAAACAAGTCCAGCAAGGGTTAGCTCTGCGGCAAGTGGTGGCCGTGGGAGCACAGAAAATGGTGGGCCAAAGCTCGTGATGTTCAACAACAAGATCACTCTAGCGGAAACAATCGAGGCAACAAGGCAATTCGATGAAGAAAACGTTCTAAGCAGAACCCGTTATGGGTTGGTTTTCAAGGCTTGTTACAATGATGGCATGGTGCTCTCAATCCGCCGTCTCTCAAATGGTTCATTGGACGAAAACATGTTCAGAAAAGAAGCTGAAGCATTGGGAAAAGTCAGGCACCGCAATCTGACTGTTCTTCGTGGCTACTACGCTGGCCCTCCTGATATGCGGCTATTGGTATACGATTACATGCCTAATGGAAACCTTGCCACTCTCCTTCAGGAAGCATCTCACCAAGATGGTCATGTTCTAAATTGGCCAATGCGGCATCTCATTGCTCTAGGAATCGCCCGTGGCCTAGCCTTTCTCCATTCATCTTCTATTATCCATGGAGATGTCAAGCCACAAAGCGTTCTATTCGATGCCGATTTTGAAGCTCATTTGTCCGACTTCGGGCTAGACCGATTAACCGTAGCCTCTGCCGAAGCATCCACATCTACCTTGGTGGGCACTTTGGGCTACATTGCCCCGGAAGCAGTGTTGACGGGGGAGGCCACAAAGGAATCTGATGTCTACAGCTTTGGGATTGTGTTGCTAGAGATTCTAACAGGGAAGAAACCAGTGATGTTCACAGAAGATGAAGACATTGTCAAGTGGGTGAAAAAGCAATTGCAGAGAGGCCAAATTACAGAGCTCCTAGAGCCAGGCTTGCTTGAGCTGGATCCTGAATCATCAGAATGGGAAGAGTTCTTGCTGGGTGTCAAAGTTGGATTGCTCTGCACTGCACCCGATCCCCGCGATCGGCCGACCATGTCCGATATCGTTTTCATGCTTGAAGGATGCCGAGTCGGACCCGACATCCCCTCCTCCGCCGATCCCACCTCCCAACCGTCACCGGCGTAA 3402 47.71 MKLLLLLFFPLLLLSGCFFSSSADTSAQTLVEIQALMSFKLNLHDPLAALTGWDSSTPLAPCDWRGVVCTSNRVTELRLPRLQLAGRLTDQLANLQMLRKLSIRSNFFNGTIPSSLSKCAFLRSVFLQYNSFSGGLPAEFGNLTNLHVFNVAENRLSGVIPGDLPRSLKYLDLSSNGFSGQIPRSVVNMTQLQVVNLSFNRFGGEIPASFGELQQLQHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGVIPAAIGALPNLQVISLSQNSLTGSVPYSMFCNVSTHAPSLRIVQLGFNAFTDIVKPQIATCFSALQVLDIQHNQIRGEFPLWLTGVTTLTVLDFSVNDFSGDIPPGIGNLSGLQELKMANNSFHGAIPLEIKNCASISVIDLEGNRLTGEIPPFLGFMRGLKRLSLGGNHFSGMVPASLGNLLELEILNLADNGLNGTLPLELMKLGNLTSMELGGNKFSGEFPIGIGNLSRLEILNLSANSLSGKIPSSLGNLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGNVPEGFSSLVGLRYLNLSSNGFSGQIPSNYGFLRSLVSLSLSKNHISGSIPSELGNCSDLESLEVRSNALSGQIPADLSRLFHLQELDLGRNNLTGEIPEEISSCSSLESLLLDSNHLSGTIPESLSELSNLTRLDLSSNNLTGVIPANLSSITGLVSLNVSNNDLEGEIPPPLGSRFNSSSVFANNSDLCGKPLARNCKDTEKKDRMKRLILFIAVAASGACLLTLCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAASGGRGSTENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLSNGSLDENMFRKEAEALGKVRHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLAFLHSSSIIHGDVKPQSVLFDADFEAHLSDFGLDRLTVASAEASTSTLVGTLGYIAPEAVLTGEATKESDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQITELLEPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPTMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5554959 5558360 - Maker00013234 Lcy1g0648 622560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0648 1133 ProSiteProfiles Protein kinase domain profile. 841 1120 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0648 1133 SUPERFAMILY L domain-like 578 738 - -
Lcy1g0648 1133 FunFam Putative LRR receptor-like serine/threonine-protein kinase 805 916 - -
Lcy1g0648 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 188 - -
Lcy1g0648 1133 Gene3D Ribonuclease Inhibitor 31 164 IPR032675 -
Lcy1g0648 1133 Gene3D Transferase(Phosphotransferase) domain 1 917 1119 - -
Lcy1g0648 1133 Gene3D Phosphorylase Kinase; domain 1 814 916 - -
Lcy1g0648 1133 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 291 1114 IPR050647 -
Lcy1g0648 1133 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Lcy1g0648 1133 SMART LRR_typ_2 531 554 IPR003591 -
Lcy1g0648 1133 SMART LRR_typ_2 579 603 IPR003591 -
Lcy1g0648 1133 SMART LRR_typ_2 411 434 IPR003591 -
Lcy1g0648 1133 SMART LRR_typ_2 189 212 IPR003591 -
Lcy1g0648 1133 SMART LRR_typ_2 143 167 IPR003591 -
Lcy1g0648 1133 SMART LRR_typ_2 213 236 IPR003591 -
Lcy1g0648 1133 SMART LRR_typ_2 627 651 IPR003591 -
Lcy1g0648 1133 SMART LRR_typ_2 261 285 IPR003591 -
Lcy1g0648 1133 SMART LRR_typ_2 483 507 IPR003591 -
Lcy1g0648 1133 SMART LRR_typ_2 675 699 IPR003591 -
Lcy1g0648 1133 MobiDBLite consensus disorder prediction 794 821 - -
Lcy1g0648 1133 Gene3D Ribonuclease Inhibitor 285 457 IPR032675 -
Lcy1g0648 1133 FunFam Piriformospora indica-insensitive protein 2 356 453 - -
Lcy1g0648 1133 SUPERFAMILY RNI-like 314 617 - -
Lcy1g0648 1133 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 917 1119 - -
Lcy1g0648 1133 SUPERFAMILY Protein kinase-like (PK-like) 822 1121 IPR011009 -
Lcy1g0648 1133 MobiDBLite consensus disorder prediction 799 813 - -
Lcy1g0648 1133 Pfam Leucine rich repeat 529 567 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine rich repeat 653 712 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine rich repeat 191 250 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 SUPERFAMILY L domain-like 31 306 - -
Lcy1g0648 1133 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 207 307 - -
Lcy1g0648 1133 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Lcy1g0648 1133 Pfam Leucine Rich Repeat 167 188 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine Rich Repeat 390 410 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine Rich Repeat 414 435 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine Rich Repeat 342 363 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine Rich Repeat 581 603 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine Rich Repeat 485 507 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine Rich Repeat 122 143 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine Rich Repeat 629 651 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine Rich Repeat 98 119 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 Pfam Leucine Rich Repeat 318 337 IPR001611 GO:0005515(InterPro)
Lcy1g0648 1133 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 467 749 - -
Lcy1g0648 1133 Gene3D Ribonuclease Inhibitor 458 754 IPR032675 -
Lcy1g0648 1133 Gene3D Ribonuclease Inhibitor 165 284 IPR032675 -
Lcy1g0648 1133 Pfam Protein kinase domain 851 1108 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0648 Lcy-Chr1:5554959 Lcy1g1098 Lcy-Chr1:10018907 3.99E-52 dispersed
Lcy1g0648 Lcy-Chr1:5554959 Lcy9g1415 Lcy-Chr9:39135363 1.89E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65637 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0648 - - - 0.0