Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0650 ATGAGGATACTTTGTGATTCCTGTGAAAGTGCTGCAGCAACTTTGTTTTGTGCTGCTGATGAGGCTGCTCTCTGCGCAGCCTGTGATGCTAAGGTGCACATGTGCAATAAGCTTGCGAGCCGCCATGTAAGGGTTGGGCTCGCAAATCCGAGTGAAGTTTCTCGCTGTGATATATGTGAAAATGCACCAGCTTTCTTTTACTGTGAAATAGATGGCAGTTCCTTGTGTTTACAATGCGACGTGATTGTTCATGTGGGAGGCAAAAGAATGCACAAGAGATATCTTCGGCTGAGGCAGAGAGTTGAGTTTCCAGGGGATAAACAAAATGATATCAAGGACCTAAATGTTCAAGCGATGGAACAGGTTGAGGCAGTGAGAGGCCAAAATCAAGATGGGGCTGAGAAGCAGGAAAACTTGAGGGTCTCAGGCATTAAAGATTATTCAAATGGAGATGGGCATTCCAAGCGGGGTAATAAAGTGATTGATTTGAACATGTAG 498 44.98 MRILCDSCESAAATLFCAADEAALCAACDAKVHMCNKLASRHVRVGLANPSEVSRCDICENAPAFFYCEIDGSSLCLQCDVIVHVGGKRMHKRYLRLRQRVEFPGDKQNDIKDLNVQAMEQVEAVRGQNQDGAEKQENLRVSGIKDYSNGDGHSKRGNKVIDLNM 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5566956 5567764 + Maker00012150 Lcy1g0650 622562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0650 165 Pfam B-box zinc finger 4 41 IPR000315 GO:0008270(InterPro)
Lcy1g0650 165 Pfam B-box zinc finger 52 85 IPR000315 GO:0008270(InterPro)
Lcy1g0650 165 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Lcy1g0650 165 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Lcy1g0650 165 CDD Bbox1_BBX-like 56 95 IPR049808 -
Lcy1g0650 165 MobiDBLite consensus disorder prediction 125 165 - -
Lcy1g0650 165 FunFam B-box zinc finger protein 19 2 92 - -
Lcy1g0650 165 Gene3D Classic Zinc Finger 1 93 - -
Lcy1g0650 165 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Lcy1g0650 165 ProSiteProfiles Zinc finger B-box type profile. 51 97 IPR000315 GO:0008270(InterPro)
Lcy1g0650 165 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 136 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0650 Lcy-Chr1:5566956 Lcy6g0640 Lcy-Chr6:6095079 1.64E-22 dispersed
Lcy1g0650 Lcy-Chr1:5566956 Lcy13g1934 Lcy-Chr13:38364668 3.96E-19 wgd
Lcy1g0650 Lcy-Chr1:5566956 Lcy6g0892 Lcy-Chr6:9103017 4.17E-55 wgd
Lcy1g0650 Lcy-Chr1:5566956 Lcy8g1175 Lcy-Chr8:38136515 6.10E-47 wgd
Lcy1g0650 Lcy-Chr1:5566956 Lcy9g2238 Lcy-Chr9:46932300 9.42E-19 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19527 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0650 - - - 0.0