Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g0651 | ATGGATTCTCTTCTTCAACCTCTGCACATGCCACTCTTTTTCACTCTCCCTCTTTTGTTTCTGCTGGCCTTCCTCTTCAGATTCCGCCGAAAACTTCCCTATCCACCTGGCCCAAAAGGCTTGCCCTTCATCGGCAACATGCTCATGATGGACCACCTAACCCACCGTGGGCTCGCCAACCTCGCCAAGCGCTACGGCGGAATCTTCCACATGCGCATGGGCTTCCTTCACATGGTTGCCGTCTCCAACCCCGACGTCGCCCGCCAAGTTCTCCAGGTCCACGATAACATTTGTTCTAATCGCCCGGCCACCATCGCCATAAGTTACTTGACGTACGACCGCGCTGACATGGCCTTTGCTCACTACGGCCCTTTCTGGCGGCAGATGCGTAAGGTTTGCGTCATGAAGTTGTTCAGCCGCAAGCGAGCCGAGTCGTGGGCGTCTGTTCGAGATGAGGTGGACACCGCCATTAGAAAGGTCACCGGCCGAACGGGAACCGCCGTGAATATCGGTGAGCTCGTGTTTGAATTGACGAGAGACATCATTTATAGAGCTGCCTTTGGGACGAGCGCAGTGCAAGGTCAGGATGAGTTTATAAGAATCTTGCAAGAATTCTCGAGACTCTTTGGAGCTTTCAATATCGCCGATTTTATTCCAAGTTTGGGCTGGATTGACCCTCAAGGCTTGAACAACAGGCTGGTCAAAGCTCGTCAATCGCTTGATAAGTTCATTGACACCATAATCGACGAACACATGGAGAATAAAAGAAAGAGAACGTTGTCAAATGTGAAAGATGATGAAATTGACACTGATATGGTGGACGAATTACTGGCTTTTTATGATGAACATGCAACAGTCAATGAATCGAACGATCAACAAAACACCATCAAGCTCAACCGTGACAACATCAAAGCTATCATCATGGACGTTATGTTTGGCGGAACGGAGACGGTAGCGTCGGCGATAGAGTGGGCCATGTCGGAGTTAATGAGAAACCCAGAAGATCTAAAGAAAGCCCAACAAGAACTCGCTGAAGTCGTTGGTTTCGAACGACGTGTCGAAGAAACCGACTTCGAGAATTTGACCTTTTTGAAATGCTGCCTCAAGGAGACTCTTCGGCTCCACCCGCCGATCCCGCTCCTCCTCCACGAGACGGCGGAGGACTTGGTCGTCTCCGGCTACTTCATTCCGGCGAAATCTCGGGTCATGGTCAACGCGTGGGCCATCGGGAGGGACCCGGCCTCGTGGGACGACGCCGAAACATTCCGGCCGGCGAGGTTTCTCGAGCAGGGGGTGCCGGATTTTAAAGGGAGCAATTTCGAGTTTATTCCGTTCGGTTCGGGTCGTCGGTCTTGCCCCGGAATGCAACTGGGTCTGTACGGGCTTGAGATGGCGGTGGCCCACTTGCTGCATTGTTTCACATGGGAATTGCCCGACGGGATGAAGCCGAGCGAGATGGACATGGGCGACGTTTTCGGGTTGACCGCTCCGAGAGCGACCCGACTTGTTGCTGTGCCCACCAAGCGGGTTCTGTGTCCACTCGTTTGA | 1548 | 52.78 | MDSLLQPLHMPLFFTLPLLFLLAFLFRFRRKLPYPPGPKGLPFIGNMLMMDHLTHRGLANLAKRYGGIFHMRMGFLHMVAVSNPDVARQVLQVHDNICSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKVCVMKLFSRKRAESWASVRDEVDTAIRKVTGRTGTAVNIGELVFELTRDIIYRAAFGTSAVQGQDEFIRILQEFSRLFGAFNIADFIPSLGWIDPQGLNNRLVKARQSLDKFIDTIIDEHMENKRKRTLSNVKDDEIDTDMVDELLAFYDEHATVNESNDQQNTIKLNRDNIKAIIMDVMFGGTETVASAIEWAMSELMRNPEDLKKAQQELAEVVGFERRVEETDFENLTFLKCCLKETLRLHPPIPLLLHETAEDLVVSGYFIPAKSRVMVNAWAIGRDPASWDDAETFRPARFLEQGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYGLEMAVAHLLHCFTWELPDGMKPSEMDMGDVFGLTAPRATRLVAVPTKRVLCPLV | 515 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 5585880 | 5588365 | - | Maker00012569 | Lcy1g0651 | 622563 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g0651 | 515 | Pfam | Cytochrome P450 | 35 | 497 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | SUPERFAMILY | Cytochrome P450 | 27 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 445 | 454 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | E-class P450 group I signature | 322 | 348 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | E-class P450 group I signature | 452 | 475 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | E-class P450 group I signature | 302 | 319 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | E-class P450 group I signature | 442 | 452 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | E-class P450 group I signature | 365 | 383 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | E-class P450 group I signature | 405 | 429 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | CDD | CYP71-like | 64 | 502 | - | - | |
| Lcy1g0651 | 515 | PANTHER | CYTOCHROME P450 84A1-RELATED | 9 | 514 | IPR053062 | GO:0004497(PANTHER) | |
| Lcy1g0651 | 515 | Gene3D | Cytochrome P450 | 27 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | P450 superfamily signature | 443 | 452 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | P450 superfamily signature | 313 | 330 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | PRINTS | P450 superfamily signature | 366 | 377 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g0651 | 515 | FunFam | Cytochrome P450 84A1 | 27 | 508 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0651 | Lcy-Chr1:5585880 | Lcy6g0943 | Lcy-Chr6:9701182 | 4.37E-272 | dispersed | |
| Lcy1g0651 | Lcy-Chr1:5585880 | Lcy1g0743 | Lcy-Chr1:6387256 | 1.86E-124 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy1g0651 | K09755 | - | csv:101205783 | 828.55 |