Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0653 ATGGAGGCATCTTTGAAGATGGGTCTCATGAAGGAGATGAGTTTCAAATCCAGCCCCAAGCTTTATCTGGACGAATTTTGGCCTTCCAATCCCCAAAACGCTGCATCCCCTTCCTCCGATTACATTTTTGTAGACCAACTCCTCAACTTTTCAAATGAAGAAGATGGCTTTATTAAAGAAGAAGAAGAAGAAGAGGCAGAGGGTCAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCCCTGCAACTGCAACAGCACCACGAGAGCGACGAAAATTCCAACCACAGCTCCACCATTTCCTCCGAAGATGATTTCTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCCGCCGCACCACCCTGCTCTGTTTTTTTTACAGAGAAACCCAATAATTGCCAAAAGGAAACAACCCACCACTTCCAGCCGCTGCAGAAATTTGGGCCTAATCTCAAGACCCCATTTCCCTCAAAGCCCAGAAGCAAGCGGGCGAAAATCTCCGGCCGAGTCTGGTCCTTTACGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATTCGGCGGTGGAGGGCTCCGGCAGGGTCCAGCCTTCGCGGCGGTGCAGCCATTGCGGCGTTCAAAAAACCCCACAATGGCGAGCCGGTCCACTGGGAGCAAAAACGCTGTGTAATGCGTGCGGCGTCCGGTTCAAATCCGGCCGACTTTTTCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAAGCGAAATCCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCCGTCCGGTCCGGATCCGACCGTAGGAGTAGAGTAG 915 50.71 MEASLKMGLMKEMSFKSSPKLYLDEFWPSNPQNAASPSSDYIFVDQLLNFSNEEDGFIKEEEEEEAEGQEKNNHSSVSAPLQLQQHHESDENSNHSSTISSEDDFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPPCSVFFTEKPNNCQKETTHHFQPLQKFGPNLKTPFPSKPRSKRAKISGRVWSFTNSISSPSLYSPPAKKPKKNSAVEGSGRVQPSRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNHHRKVLEMRRKKETEKPPSGPDPTVGVE 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5616528 5617442 - Maker00012283 Lcy1g0653 622565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0653 304 MobiDBLite consensus disorder prediction 54 104 - -
Lcy1g0653 304 PIRSF Txn_fac_GATA_plant 10 296 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lcy1g0653 304 Pfam GATA zinc finger 223 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 MobiDBLite consensus disorder prediction 159 179 - -
Lcy1g0653 304 PANTHER GATA TRANSCRIPTION FACTOR 44 289 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lcy1g0653 304 MobiDBLite consensus disorder prediction 72 87 - -
Lcy1g0653 304 FunFam GATA transcription factor 214 295 - -
Lcy1g0653 304 Gene3D - 215 292 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy1g0653 304 ProSiteProfiles GATA-type zinc finger domain profile. 217 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 279 - -
Lcy1g0653 304 SMART GATA_3 217 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 MobiDBLite consensus disorder prediction 284 304 - -
Lcy1g0653 304 CDD ZnF_GATA 222 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 ProSitePatterns GATA-type zinc finger domain. 223 248 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 MobiDBLite consensus disorder prediction 197 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0653 Lcy-Chr1:5616528 Lcy3g2144 Lcy-Chr3:48366080 6.30E-37 dispersed
Lcy1g0653 Lcy-Chr1:5616528 Lcy6g0914 Lcy-Chr6:9274699 5.50E-09 wgd
Lcy1g0653 Lcy-Chr1:5616528 Lcy6g0944 Lcy-Chr6:9740345 5.61E-62 wgd
Lcy1g0653 Lcy-Chr1:5616528 Lcy8g1171 Lcy-Chr8:38086267 3.36E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19529 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0653 - - - 0.0