Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0653 | ATGGAGGCATCTTTGAAGATGGGTCTCATGAAGGAGATGAGTTTCAAATCCAGCCCCAAGCTTTATCTGGACGAATTTTGGCCTTCCAATCCCCAAAACGCTGCATCCCCTTCCTCCGATTACATTTTTGTAGACCAACTCCTCAACTTTTCAAATGAAGAAGATGGCTTTATTAAAGAAGAAGAAGAAGAAGAGGCAGAGGGTCAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCCCTGCAACTGCAACAGCACCACGAGAGCGACGAAAATTCCAACCACAGCTCCACCATTTCCTCCGAAGATGATTTCTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCCGCCGCACCACCCTGCTCTGTTTTTTTTACAGAGAAACCCAATAATTGCCAAAAGGAAACAACCCACCACTTCCAGCCGCTGCAGAAATTTGGGCCTAATCTCAAGACCCCATTTCCCTCAAAGCCCAGAAGCAAGCGGGCGAAAATCTCCGGCCGAGTCTGGTCCTTTACGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATTCGGCGGTGGAGGGCTCCGGCAGGGTCCAGCCTTCGCGGCGGTGCAGCCATTGCGGCGTTCAAAAAACCCCACAATGGCGAGCCGGTCCACTGGGAGCAAAAACGCTGTGTAATGCGTGCGGCGTCCGGTTCAAATCCGGCCGACTTTTTCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAAGCGAAATCCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCCGTCCGGTCCGGATCCGACCGTAGGAGTAGAGTAG | 915 | 50.71 | MEASLKMGLMKEMSFKSSPKLYLDEFWPSNPQNAASPSSDYIFVDQLLNFSNEEDGFIKEEEEEEAEGQEKNNHSSVSAPLQLQQHHESDENSNHSSTISSEDDFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPPCSVFFTEKPNNCQKETTHHFQPLQKFGPNLKTPFPSKPRSKRAKISGRVWSFTNSISSPSLYSPPAKKPKKNSAVEGSGRVQPSRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNHHRKVLEMRRKKETEKPPSGPDPTVGVE | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5616528 | 5617442 | - | Maker00012283 | Lcy1g0653 | 622565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0653 | 304 | MobiDBLite | consensus disorder prediction | 54 | 104 | - | - | |
Lcy1g0653 | 304 | PIRSF | Txn_fac_GATA_plant | 10 | 296 | IPR016679 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro) | |
Lcy1g0653 | 304 | Pfam | GATA zinc finger | 223 | 256 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy1g0653 | 304 | MobiDBLite | consensus disorder prediction | 159 | 179 | - | - | |
Lcy1g0653 | 304 | PANTHER | GATA TRANSCRIPTION FACTOR | 44 | 289 | IPR051140 | GO:0005634(PANTHER)|GO:0030154(PANTHER) | |
Lcy1g0653 | 304 | MobiDBLite | consensus disorder prediction | 72 | 87 | - | - | |
Lcy1g0653 | 304 | FunFam | GATA transcription factor | 214 | 295 | - | - | |
Lcy1g0653 | 304 | Gene3D | - | 215 | 292 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Lcy1g0653 | 304 | ProSiteProfiles | GATA-type zinc finger domain profile. | 217 | 253 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy1g0653 | 304 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 218 | 279 | - | - | |
Lcy1g0653 | 304 | SMART | GATA_3 | 217 | 271 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy1g0653 | 304 | MobiDBLite | consensus disorder prediction | 284 | 304 | - | - | |
Lcy1g0653 | 304 | CDD | ZnF_GATA | 222 | 270 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy1g0653 | 304 | ProSitePatterns | GATA-type zinc finger domain. | 223 | 248 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Lcy1g0653 | 304 | MobiDBLite | consensus disorder prediction | 197 | 222 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0653 | Lcy-Chr1:5616528 | Lcy3g2144 | Lcy-Chr3:48366080 | 6.30E-37 | dispersed | |
Lcy1g0653 | Lcy-Chr1:5616528 | Lcy6g0914 | Lcy-Chr6:9274699 | 5.50E-09 | wgd | |
Lcy1g0653 | Lcy-Chr1:5616528 | Lcy6g0944 | Lcy-Chr6:9740345 | 5.61E-62 | wgd | |
Lcy1g0653 | Lcy-Chr1:5616528 | Lcy8g1171 | Lcy-Chr8:38086267 | 3.36E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19529 | None | None | None | None | Lcy | TF |
Pathway information
