Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0653 ATGGAGGCATCTTTGAAGATGGGTCTCATGAAGGAGATGAGTTTCAAATCCAGCCCCAAGCTTTATCTGGACGAATTTTGGCCTTCCAATCCCCAAAACGCTGCATCCCCTTCCTCCGATTACATTTTTGTAGACCAACTCCTCAACTTTTCAAATGAAGAAGATGGCTTTATTAAAGAAGAAGAAGAAGAAGAGGCAGAGGGTCAAGAAAAAAACAACCACTCCTCTGTTTCTGCTCCCCTGCAACTGCAACAGCACCACGAGAGCGACGAAAATTCCAACCACAGCTCCACCATTTCCTCCGAAGATGATTTCTGGTCTGTTTCTTCAAGAGATTTTGAAGACCTCGAATGGCTCTCCCATCTCGTCGCCGACTCCACCCAAGAAGAATACTCCGCCGCACCACCCTGCTCTGTTTTTTTTACAGAGAAACCCAATAATTGCCAAAAGGAAACAACCCACCACTTCCAGCCGCTGCAGAAATTTGGGCCTAATCTCAAGACCCCATTTCCCTCAAAGCCCAGAAGCAAGCGGGCGAAAATCTCCGGCCGAGTCTGGTCCTTTACGAATTCAATTTCTTCTCCATCGTTATATTCGCCGCCGGCGAAGAAACCAAAGAAGAATTCGGCGGTGGAGGGCTCCGGCAGGGTCCAGCCTTCGCGGCGGTGCAGCCATTGCGGCGTTCAAAAAACCCCACAATGGCGAGCCGGTCCACTGGGAGCAAAAACGCTGTGTAATGCGTGCGGCGTCCGGTTCAAATCCGGCCGACTTTTTCCCGAATATAGACCGGCTTGCAGCCCGACTTTTTCAAGCGAAATCCACTCGAACCACCACCGGAAAGTACTGGAGATGCGACGTAAAAAGGAAACGGAGAAACCCCCGTCCGGTCCGGATCCGACCGTAGGAGTAGAGTAG 915 50.71 MEASLKMGLMKEMSFKSSPKLYLDEFWPSNPQNAASPSSDYIFVDQLLNFSNEEDGFIKEEEEEEAEGQEKNNHSSVSAPLQLQQHHESDENSNHSSTISSEDDFWSVSSRDFEDLEWLSHLVADSTQEEYSAAPPCSVFFTEKPNNCQKETTHHFQPLQKFGPNLKTPFPSKPRSKRAKISGRVWSFTNSISSPSLYSPPAKKPKKNSAVEGSGRVQPSRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSEIHSNHHRKVLEMRRKKETEKPPSGPDPTVGVE 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5616528 5617442 - Maker00012283 Lcy1g0653 622565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0653 304 MobiDBLite consensus disorder prediction 54 104 - -
Lcy1g0653 304 PIRSF Txn_fac_GATA_plant 10 296 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Lcy1g0653 304 Pfam GATA zinc finger 223 256 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 MobiDBLite consensus disorder prediction 159 179 - -
Lcy1g0653 304 PANTHER GATA TRANSCRIPTION FACTOR 44 289 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Lcy1g0653 304 MobiDBLite consensus disorder prediction 72 87 - -
Lcy1g0653 304 FunFam GATA transcription factor 214 295 - -
Lcy1g0653 304 Gene3D - 215 292 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Lcy1g0653 304 ProSiteProfiles GATA-type zinc finger domain profile. 217 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 218 279 - -
Lcy1g0653 304 SMART GATA_3 217 271 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 MobiDBLite consensus disorder prediction 284 304 - -
Lcy1g0653 304 CDD ZnF_GATA 222 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 ProSitePatterns GATA-type zinc finger domain. 223 248 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0653 304 MobiDBLite consensus disorder prediction 197 222 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0653 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0653 Lcy-Chr1:5616528 Lcy3g2144 Lcy-Chr3:48366080 6.30E-37 dispersed
Lcy1g0653 Lcy-Chr1:5616528 Lcy6g0914 Lcy-Chr6:9274699 5.50E-09 wgd
Lcy1g0653 Lcy-Chr1:5616528 Lcy6g0944 Lcy-Chr6:9740345 5.61E-62 wgd
Lcy1g0653 Lcy-Chr1:5616528 Lcy8g1171 Lcy-Chr8:38086267 3.36E-35 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1431 . 81 374 C2C2-Gata Transcription Factor Family AT5G25830 52.9 1.4e-69 260.8
Lcy6g0914 . 13 262 C2C2-Gata Transcription Factor Family AT3G50870 52.3 2.8e-37 153.3
Lcy6g0944 . 99 372 C2C2-Gata Transcription Factor Family AT3G51080 50.7 2.0e-54 210.3
Lcy1g0653 . 112 288 C2C2-Gata Transcription Factor Family AT4G36240 51.9 9.7e-41 164.5
Lcy12g1875 . 19 543 C2C2-Gata Transcription Factor Family AT4G17570 50.1 2.9e-122 436.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014154 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 0 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19529 None None None None Lcy TF