Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0659 ATGTCTGCCTTTTTCACTTTAGGTGGTGGTGGAGGAGGAAGAGGAAGCGAAGACCAAGAAGACCAACAACACAACACCAACCGCCCCAACGAAATTGTTCACCCCGATAATTTGTTTTGGTACAAGGGCAACGTGGAGCTATGGCAGCAGCAGCAGCAGCAGCATCAACAAGAACAAGCTCTCTTCCAATCGCGCTCTCATCACACCAACAACCCTTACTCCTCCCCTCTAGGCGCCGCCCCTCGCCGGAGCTCCGATGAATCCTCCTCCAGATCGGGTAATTTCATGATGATCAGCTCCGGATCGGGCGGAGGGGGAATCAGCTGCCAAGACTGCGGCAACCAAGCGAAAAAAGACTGTAGCCATATGCGGTGCAGGACGTGCTGCAAGAGCCGAGGCTTCGCTTGCCAAACCCATGTGAAAAGCACTTGGGTCCCTGCCGCGAAGCGCCGCGAGCGGCAGGAGAAACTGGCGGCCTTACAAACCCACCACCAACTTCAACTCCATGGCGACACTAACAATCCGAAACGCCACAGAGATTATAACCCCACTTCCTCTTCTTCTCTTGCCTGCACTCTCATCCCCACCAACAACAACAACAACAACAACGCTTCTGGGTTGGAAATTGGGAATTTCCCGGCGGAGTTGAACTCCCCGGCTGTGTTCCGTTGCGTTCGTGTGAGCTCCGCCGACGATTCCGACGACCAATACGCGTATCAAACGGCGGTGAATATCGGAGGGCATGTTTTCAAGGGAATTCTATACGATCAAGGACCTGAAAATAATTATATTCCAGCGGGTGAGACCTCGTCCGGTGGTGGTGGGAGTAGTAGTGGAGTGCAACCACTGAATTTCATCGCTGGCGCCGCCGATGCCACCACCGCCAGCGGTGGTTCCTCCGCCGCATTACCCTTGCTTGATCCTTCTTCCTTATATTCAACGCCGCTCAATAGCTACATGGCGGGTACGCAATTCTTCCTACCACCAAGATCTTAA 996 53.82 MSAFFTLGGGGGGRGSEDQEDQQHNTNRPNEIVHPDNLFWYKGNVELWQQQQQQHQQEQALFQSRSHHTNNPYSSPLGAAPRRSSDESSSRSGNFMMISSGSGGGGISCQDCGNQAKKDCSHMRCRTCCKSRGFACQTHVKSTWVPAAKRRERQEKLAALQTHHQLQLHGDTNNPKRHRDYNPTSSSSLACTLIPTNNNNNNNASGLEIGNFPAELNSPAVFRCVRVSSADDSDDQYAYQTAVNIGGHVFKGILYDQGPENNYIPAGETSSGGGGSSSGVQPLNFIAGAADATTASGGSSAALPLLDPSSLYSTPLNSYMAGTQFFLPPRS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5659488 5662087 + Maker00012149 Lcy1g0659 622571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0659 331 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 325 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Lcy1g0659 331 NCBIfam putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Lcy1g0659 331 MobiDBLite consensus disorder prediction 49 99 - -
Lcy1g0659 331 MobiDBLite consensus disorder prediction 165 185 - -
Lcy1g0659 331 MobiDBLite consensus disorder prediction 1 34 - -
Lcy1g0659 331 NCBIfam LRP1 C-terminal domain 212 259 IPR006511 -
Lcy1g0659 331 Pfam Domain of unknown function (DUF702) 106 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0659 Lcy-Chr1:5659488 Lcy8g2063 Lcy-Chr8:46835235 1.91E-40 dispersed
Lcy1g0659 Lcy-Chr1:5659488 Lcy13g1937 Lcy-Chr13:38393571 9.22E-77 wgd
Lcy1g0659 Lcy-Chr1:5659488 Lcy6g0938 Lcy-Chr6:9560265 1.47E-57 wgd
Lcy1g0659 Lcy-Chr1:5659488 Lcy9g2234 Lcy-Chr9:46902117 6.09E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19530 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0659 K27807 - csv:101207689 476.863