Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0665 ATGGAATGGGTTTTGGGATTCTGGGTTTGGTTTGTGAGTGTTGTTTTAGGTTGGTTTTGGTTGAAGAAGAAGCTGCAGCTTATTCAAAACAAGGTTGCAATTCCAAAAGGAAACCTGGGTTGGCCTCTCATTGGTGAAACCCTTCAATTCATTGCTTCTGGCTACTCTTCTCGTCCTGTCACCTTCATGGACAAACGCAAATCTCTGTACGGCAACGTGTTTAAAACCAACATTTTGGGGACACCCATCATAGTTTCCACTGATTCAGACGTGAATAAGGTGGTTTTACAGAACCATGGCAACATTTTTATCCCAGCTTACCCCAAATCAATTACCGAATTACTTGGCTCATTTTCAATTCTTCAAATGAATGGAAATGTTCAGAAAAGAGTTCATACAATCATTGGAGCTTTTCTTAGGTCTCCTCAGCTCAAAGCCCGAATCACTAGAGATATTCAAAACACCGTTAAACTAAGGCTTGCCAATTGGAATACCTCCCAATTGGTTTATGTCCAAACCGAAACCAAACAGATCACATTTGAAGTATTGGTGAAGGTGTTGATGAGTGTGGGACCCGGTGAAGATTTGAGGATTTTGAAAAGGGAATTTGAAGAGTTCATCAAAGGCTTGATTTGTATACCCATTAAACTACCTGGAACAAGGCTATATAAATCTTTGAAGGCGAGAGAGAAGCTGTTGAAAATAGTGAGAAAAATAGTGGAAGATAGAAAATCGAGGGTGGAGGAGAAGGTTGCACCGAAGGATGCGGTGGATGTGCTGTTACAGGATCACGATGAGAGCCAAGGGCTGCCGTTGGATTTCATCAGCAGTCACATCTTAGAGCTGATGATCCCCGGCGAGGAGACGGTGCCGATGGCGATGACCCTCGCCGTCAAATTTCTCAGTGACTGCCCCGTCGCTCTAGCCCAAATGACGGAGGAGAATATGGAGCTTAAGAAACACAAGGTTGATTCTGGCCACGAGTATACGTGGACAGATTACATGTCTCTGCTATTTACTCAAAATGTGATTAGTGAAACGTTAAGAATGGCTAATATCATCAATGGGGTTTGGAGGAAAGCTCAAAAAGATGTGCAAATCAAAGGCTATTTAATACCACAAGGATGGTGCGTTTTGGCATCTTTTATTTCGGTTCATATGGATGAAAACAACTATGCAAACCCACATCAGTTTGATCCATGGAGATGGGAGGGGGACAGAGGCTATGTCCCGGCATCGAACTCGCCCGGCTCGAAATCTCAATTTTCCTTCATCATCTTCAGATGGGGAGCTGAAAAGGATGAAATCATCCATTTTCCGACAGTGAAGATGAGAAGGAAGCTGCCAATTGCTATCACAACCTTAAGCTCTTGA 1374 43.16 MEWVLGFWVWFVSVVLGWFWLKKKLQLIQNKVAIPKGNLGWPLIGETLQFIASGYSSRPVTFMDKRKSLYGNVFKTNILGTPIIVSTDSDVNKVVLQNHGNIFIPAYPKSITELLGSFSILQMNGNVQKRVHTIIGAFLRSPQLKARITRDIQNTVKLRLANWNTSQLVYVQTETKQITFEVLVKVLMSVGPGEDLRILKREFEEFIKGLICIPIKLPGTRLYKSLKAREKLLKIVRKIVEDRKSRVEEKVAPKDAVDVLLQDHDESQGLPLDFISSHILELMIPGEETVPMAMTLAVKFLSDCPVALAQMTEENMELKKHKVDSGHEYTWTDYMSLLFTQNVISETLRMANIINGVWRKAQKDVQIKGYLIPQGWCVLASFISVHMDENNYANPHQFDPWRWEGDRGYVPASNSPGSKSQFSFIIFRWGAEKDEIIHFPTVKMRRKLPIAITTLSS 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5707684 5715862 - Maker00012221 Lcy1g0665 622577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0665 457 Gene3D Cytochrome P450 25 433 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0665 457 SUPERFAMILY Cytochrome P450 31 431 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0665 457 CDD CYP90-like 66 453 - -
Lcy1g0665 457 Pfam Cytochrome P450 35 430 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0665 457 PANTHER CYTOCHROME P450 26 33 430 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER)
Lcy1g0665 457 PRINTS E-class P450 group IV signature 337 353 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0665 457 PRINTS E-class P450 group IV signature 61 84 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g0665 457 PRINTS E-class P450 group IV signature 386 404 IPR002403 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0665 Lcy-Chr1:5707684 Lcy3g2208 Lcy-Chr3:48938655 5.28E-99 dispersed
Lcy1g0665 Lcy-Chr1:5707684 Lcy13g0159 Lcy-Chr13:1628527 4.63E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0665 K12637 - csv:101203911 724.161