Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0670 ATGGCTAAGCTTGTGAGCTTTGTCTTTGTTCTTTCCCTTCTTGCCTTTGCTCCACTCTGTTTCTCTAGCAGGATTGGTGGCAGTGGGTCTCTGTACCCGCAATATTATGACCATTCGTGCCCCAAAGCTAAGGAAATAGTCAAATCAGTGATGGCAAAGGCTTTTGCAAGGGAAGCTCGTATTGCTGCTTCTATCCTTAGACTTCACTTCCATGACTGTTTTGTTCAGGGGTGTGATGCATCTATACTACTGGATAGCAGTGGGAGCATCAGGAGTGAAAAGAATTCAAACCCAAATAGGAACTCGGCTAGAGGGTTTGAAGTGATTGATGAGATCAAATCCGCATTGGAGAAAGAGTGCCCACAAACTGTTTCTTGTGCTGACATCTTGGCTTTGGCTGCAAGAGATTCCACTGTCATTACGGGTGGACCCTTTTGGGAGGTTCCATTGGGAAGGAAGGACTCGAGAACTGCGAGTTTGAGTGGCTCCAACAACAACATTCCAGCTCCAAACAGTACATTCCAAACCATTCTCAATAGATTCCAAAACCAAGGGCTTGACATCGTTGACGTCGTTGCCTTATCTGGAGGACACACCATCGGAAATTCAAGGTGCACCAGCTTCAGGCAGAGGCTGTACAACCAGAACGGCAACGGACAGCCCGATAAAACCCTTCAGCAGTCGTACGCGGCCGAGCTCCGGAGCCGCTGCCCGAGATCCGGCGGCGACAACAACCTCTTTTTCCTGGACTTCGTCAGCCCGACCAAATTCGACAACAGCTACTTCAAGAACCTAGTTGGTTTCAAAGGCCTTCTCAACTCCGACCAAGTTCTCCTCACCCAAAACGACGCGTCGGCCAATTTGGTAAAGAAATATGCCGACGACAGCCAGATGTTCTTCGAGCAATTCGCAAAATCTATGATCAAAATGAGCAAGATTTCCCCATTGACGGGCTCCAGTGGAGAGATCAGAAAGACTTGCAGGAAGATCAACAATTAA 999 48.15 MAKLVSFVFVLSLLAFAPLCFSSRIGGSGSLYPQYYDHSCPKAKEIVKSVMAKAFAREARIAASILRLHFHDCFVQGCDASILLDSSGSIRSEKNSNPNRNSARGFEVIDEIKSALEKECPQTVSCADILALAARDSTVITGGPFWEVPLGRKDSRTASLSGSNNNIPAPNSTFQTILNRFQNQGLDIVDVVALSGGHTIGNSRCTSFRQRLYNQNGNGQPDKTLQQSYAAELRSRCPRSGGDNNLFFLDFVSPTKFDNSYFKNLVGFKGLLNSDQVLLTQNDASANLVKKYADDSQMFFEQFAKSMIKMSKISPLTGSSGEIRKTCRKINN 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5730655 5732537 - Maker00012488 Lcy1g0670 622582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0670 332 ProSitePatterns Peroxidases active site signature. 62 73 IPR019794 GO:0004601(InterPro)
Lcy1g0670 332 FunFam Peroxidase 34 176 - -
Lcy1g0670 332 CDD secretory_peroxidase 31 330 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy1g0670 332 PANTHER PEROXIDASE 72-RELATED 9 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 FunFam Peroxidase 168 310 - -
Lcy1g0670 332 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Haem peroxidase superfamily signature 124 141 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 Gene3D - 35 331 - -
Lcy1g0670 332 SUPERFAMILY Heme-dependent peroxidases 31 331 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Plant peroxidase signature 104 117 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Plant peroxidase signature 123 133 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 ProSiteProfiles Plant heme peroxidase family profile. 30 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Lcy1g0670 332 Pfam Peroxidase 47 295 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0670 332 Gene3D Peroxidase, domain 2 168 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1914 Lcy-Chr12:40422297 Lcy1g0670 Lcy-Chr1:5730655 1.62E-67 dispersed
Lcy13g1893 Lcy-Chr13:37882265 Lcy1g0670 Lcy-Chr1:5730655 1.33E-81 dispersed
Lcy1g0670 Lcy-Chr1:5730655 Lcy8g1698 Lcy-Chr8:43551438 1.34E-100 dispersed
Lcy5g0277 Lcy-Chr5:2596675 Lcy1g0670 Lcy-Chr1:5730655 1.88E-66 dispersed
Lcy1g0670 Lcy-Chr1:5730655 Lcy6g0931 Lcy-Chr6:9470773 1.21E-188 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0670 K00430 - csv:101204648 585.874