Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0704 ATGGAAGCTCCAGTAAGGGCATTTCGGCCCTACGTTCTTAATCGCCGCCTGTTTTCAAAAACAATTCCTCCATCGCGCCTCGTTGCATCTCCTGAATCTAATCGGAGCGCACTTTTCCGGCAATCTCCAACCTATTTGCATCCTCCTCCATCTCGAACGTTCCCCGGTTCCAAAATCTCACTCTCACTCAACCTTTCTCACTGCTCCTCCTCGCCCTTCGGATCTTCTTCCTCTTCTCTTGGCTTTAACCCTTCTAATTTTCTTTCTTCTTTACCCTCAATACAATCTTTCGGCTCCCAATTCGAGCCTGATCACTTCAATTCGTTCCTATCCGATTCGAATGGCAGTACCTGGACTTGGAATCGAGCTTCAGAGAGTGCAATTAAGGGAAACGTGGGGGTTTTAGGAGGCGAAAAGGGATCGGCGACCGTTGTGTTGTTAGGTTGGCTCGGGTCGAAGACAAAGCATCTGAGGAGGTACGTGGAGTGGTACAATGCAAGGGGTATCAACGCCTTGACGTTTGTGGTTGATCCGACCGAGTTTCTTTGGTTTGCGTTGAGTCGGAGAGTTGAACAGCGGATTTCGGATTTAGCGGTTGAACTCATTTCTTGGTTATCAGACGGAGAAGGGAGTGATAAAGATCGGTCCCTGATATTTCACACTTTTAGCAATACAGGCTGGTTTGTATACGGCGCCATTCTTGAAATTTTGCAGGGTCGGAAGGATTTGTTGGAGAAGATCAAAGGATGCATTGTTGATTCTGGAGGAGGTGATCCATTGAATCCTCAGGTTTGGGCAGCTGGATTTTCTGCAGCCATTCTCAAGAAAAATAGTTCTTCTACATCTCCTGTCGTTGATGGAGAGGAATTAGACAAGAAACCTCCTTGGATGGAAACCTTTGTTCTATCATCATTGGAGAAGTTTTTCTCAGTCGCTTTGAAGTTGCCAGAAGTCGATAAGAGATTGAAGAAGATTGTTTCAGTTCTTACAGAGAACCAGCCTTTATATCCTGAGCTTTATCTGTACAGTTCAGGAGATAGAGTTGTGCCATTCGAGTCAATCGAGCTACTTATCGAGAAGAGAAAGAAGACGGGAAGGAAGGTTTTGTCACACGACTTTCGCTCATCGCCGCATGTTGATCATTACAGGACATACCCAGATATATACTCATCACAGCTTCACAAGTTCTTGAACTATCCCAAATCGGCAAAGATGAACGATTTGATGACGAAATCGTTCCTAAGTTATGTGGAATTAAAGAAACAGGCACAGAGCGACGCCCCAGATTCCTTATCCGCCGGCGGCGACTTCGACATCGAATCCGGCGGCCAAGAACTCAATCCGACGGAAGAACAGAACCTGTCTCTGTTTTTCGAACAAGTCGAGGAAATCAAGACCCAAATGGAAGAGACAACCAATCTCTTAATCGACATTCAGAAACTAAATCAAGAAGCCAAATCAACCCACAACGCCAAGATCCTCCGCGGATTAAGAGACCGAATCGACTCCGACATGGTCTCGATCCTCCGCAGAGCGAAACTCCTCAAAGAGAAATTGGCCTCTCTCGACCAATCCAACGCCGCCAACCGCCTGATTTCCGTCGCGTACGGCGAAGGAACCGCCGTCGACAGAACGAGAACCTCAATCACCAACGGACTGAGAGTGAAATTGAGAGAAATGATGAACGAATTCCAGTCTCTGAGAGAAAAAGTCGTGGCGGATCACAAGGAAGATCTGAGAAGAAGGTACTTCGGAGCAAATGGGGAACAACCCAGTGAAGAACAGATCGAGAAGATCATGTCTGGGAGTTTGAAACTCGAATCATTCGGAGGAAAACTGAGCGAGACCGAGTTGGGGGACCGAGTCAGGCACGAGTCAGTGATGGACATACAGAGGAGTTTGAACAAGCTTCATCAAGTATTTCTGGACATGGCGATTCTGGTCGAGAGCCAAGGGGAGAAGGTGGAAGACATTGAAGAGAATGTGGCGAAAGGTGGGAGGTTCATCAATGGCGGCACTCGAAGCCTTTACTATGCGAACCAGATGAAGAGGAAGAACAAGAAGTGGGTGTATTGGGTTTGGAGTTTGATTTTTGTTATATTGCTTGTTTGCATTGTTGCTATGTTGGTTTGTTAG 2136 46.68 MEAPVRAFRPYVLNRRLFSKTIPPSRLVASPESNRSALFRQSPTYLHPPPSRTFPGSKISLSLNLSHCSSSPFGSSSSSLGFNPSNFLSSLPSIQSFGSQFEPDHFNSFLSDSNGSTWTWNRASESAIKGNVGVLGGEKGSATVVLLGWLGSKTKHLRRYVEWYNARGINALTFVVDPTEFLWFALSRRVEQRISDLAVELISWLSDGEGSDKDRSLIFHTFSNTGWFVYGAILEILQGRKDLLEKIKGCIVDSGGGDPLNPQVWAAGFSAAILKKNSSSTSPVVDGEELDKKPPWMETFVLSSLEKFFSVALKLPEVDKRLKKIVSVLTENQPLYPELYLYSSGDRVVPFESIELLIEKRKKTGRKVLSHDFRSSPHVDHYRTYPDIYSSQLHKFLNYPKSAKMNDLMTKSFLSYVELKKQAQSDAPDSLSAGGDFDIESGGQELNPTEEQNLSLFFEQVEEIKTQMEETTNLLIDIQKLNQEAKSTHNAKILRGLRDRIDSDMVSILRRAKLLKEKLASLDQSNAANRLISVAYGEGTAVDRTRTSITNGLRVKLREMMNEFQSLREKVVADHKEDLRRRYFGANGEQPSEEQIEKIMSGSLKLESFGGKLSETELGDRVRHESVMDIQRSLNKLHQVFLDMAILVESQGEKVEDIEENVAKGGRFINGGTRSLYYANQMKRKNKKWVYWVWSLIFVILLVCIVAMLVC 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6032015 6036834 + Maker00013301 Lcy1g0704 622616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0704 711 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 623 679 IPR000727 -
Lcy1g0704 711 MobiDBLite consensus disorder prediction 425 446 - -
Lcy1g0704 711 Pfam Eukaryotic protein of unknown function (DUF829) 143 397 IPR008547 -
Lcy1g0704 711 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 451 582 - -
Lcy1g0704 711 Gene3D - 449 581 - -
Lcy1g0704 711 Pfam Syntaxin 457 652 IPR006011 GO:0016020(InterPro)
Lcy1g0704 711 SUPERFAMILY alpha/beta-Hydrolases 138 398 IPR029058 -
Lcy1g0704 711 CDD SNARE_syntaxin1-like 623 676 - -
Lcy1g0704 711 PANTHER UNCHARACTERIZED 86 398 IPR008547 -
Lcy1g0704 711 SMART tSNARE_6 612 679 IPR000727 -
Lcy1g0704 711 SUPERFAMILY t-snare proteins 453 672 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy1g0704 711 Gene3D - 613 710 - -
Lcy1g0704 711 CDD SynN 457 604 IPR006011 GO:0016020(InterPro)
Lcy1g0704 711 SMART SynN_4 449 576 IPR006011 GO:0016020(InterPro)
Lcy1g0704 711 FunFam Syntaxin 132 611 710 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1066 Lcy-Chr10:32830233 Lcy1g0704 Lcy-Chr1:6032015 5.12E-74 dispersed
Lcy1g0704 Lcy-Chr1:6032015 Lcy1g1665 Lcy-Chr1:17190631 4.41E-66 dispersed
Lcy1g0704 Lcy-Chr1:6032015 Lcy5g0507 Lcy-Chr5:5585492 1.56E-54 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0704 K08486 - csv:101222646 636.336