Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0706 ATGTCCTTCAAAAGCTTTTTCCGAGAGCTGAGGGAAATGAAAGATGGACTCAGAATCAAACCGAAGCATGGGGGAGAAGGGAGGAATTGGCGAAGTCGCACGAGGTCACATATTGCACCTGATGAAGTGCCTCCCCAGCCTGAAGCAATTCAACAAGGGCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTAGACATAATTCGTAGAGTAGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGTTGTCCTTTCTTGTGCGTCAGTGTGCAAGTCATGGAGAAACATTACAAAGGAAGTTGTTAAAACTCCTGAGCAGTGTGGGAGGCTCACTTTTCCCATTTCACTGAAACAGCCGGGACCTCGGGATTCTCCAATTCAGTGCTATGTTAGAAGGCATAGAGCAACTTCAACCTATCTTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAAGTGATAAACTGTTATTAGCAGCCAAGAGAATAAGAAGGGCTACGGGTACAGATTTTGTTATATCTCTGGTAGCTGATGATTTTTCTTGGGCCTGCAGTACCTATACAAAACCTTGCAGGTCCAACTTTTTTGGCACAAAGTTCACCATGTATGATAGTCAACCACCAGTTCTCACTGTAGTCCAACAGAATAATCAATCAAATCGTAGGTTTCATGCTAAGCAAGTCTCTCCAAGAATGTCAGCTTGTAACTACACTGTAGGGACAATCTCTTATGAGCTTAATGTTCTACGGACTAGAGGACCCAGAAGAATGCACTGTGTCATACACTCGATCCCTGCATCTTGCATTCAACAGGGAGGAAATGCCCCGACGCCAACCTCGTTTGCGTCCTGTGTCGATGACCATCAACCACCTCTACTGGCTTCTAAAGGAAAGGAGCCAGACACAGATTTCAGTTCCACAAGCACCACTAGCGCAACAGTTCAAGAATTGGGAGAATCCTTGGTTCTCAAGAACAAGGCTCCTAGATGGCATGAACAGCTTCAATGCTGGTGCTTGAACTTCAGAGGGCGTGTGACAGTGGCTTCTGTAAAGAATTTCCAACTTGTGGCTGATGTCGATCCAGCCCTCAATGTATCGGTTGAAGAACAAGAGAAGATAATCTTGCAGTTTGGTAAAATTGGCAAGGACATCTTCACAATGGATTACCGCTACCCGCTCTCCGCCTTCCAAGCCTTCGTAATCTGCTTGAGCAGCTTCGACACCAAACCAGCCTGTGAATAG 1239 46.09 MSFKSFFRELREMKDGLRIKPKHGGEGRNWRSRTRSHIAPDEVPPQPEAIQQGQWANLPPELLLDIIRRVEESETSWPARTVVLSCASVCKSWRNITKEVVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYLLYSGLVPSENESDKLLLAAKRIRRATGTDFVISLVADDFSWACSTYTKPCRSNFFGTKFTMYDSQPPVLTVVQQNNQSNRRFHAKQVSPRMSACNYTVGTISYELNVLRTRGPRRMHCVIHSIPASCIQQGGNAPTPTSFASCVDDHQPPLLASKGKEPDTDFSSTSTTSATVQELGESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVADVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSAFQAFVICLSSFDTKPACE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6046801 6049927 + Maker00012309 Lcy1g0706 622618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0706 412 CDD F-box_AtTLP-like 55 99 - -
Lcy1g0706 412 Gene3D - 48 101 - -
Lcy1g0706 412 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
Lcy1g0706 412 PANTHER TUBBY-RELATED 47 411 - -
Lcy1g0706 412 SUPERFAMILY Tubby C-terminal domain-like 104 412 IPR025659 -
Lcy1g0706 412 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515(InterPro)
Lcy1g0706 412 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lcy1g0706 412 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Lcy1g0706 412 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lcy1g0706 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Lcy1g0706 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Lcy1g0706 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Lcy1g0706 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Lcy1g0706 412 Pfam F-box-like 55 98 IPR001810 GO:0005515(InterPro)
Lcy1g0706 412 Gene3D Tubby Protein; Chain A 114 412 IPR025659 -
Lcy1g0706 412 Pfam Tub family 116 407 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0706 Lcy-Chr1:6046801 Lcy6g0535 Lcy-Chr6:5008947 2.66E-141 dispersed
Lcy1g0706 Lcy-Chr1:6046801 Lcy6g0905 Lcy-Chr6:9221119 3.45E-220 wgd
Lcy1g0706 Lcy-Chr1:6046801 Lcy9g2212 Lcy-Chr9:46712159 5.51E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19532 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0706 K19600 - csv:101221704 744.191