Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0708 | ATGGGAAGTGGGGTGGACCAAATAAAGTCCCCTTCTGCAGTCATCACTTTATTCTCCAAACCCACACCTGCGGCTTCCGATCTTGGGTTTGGGCGGGTGCACTTGCGAGAAGGGGTTGCGAGTGATGGAGGACGCAAGAAGACAGCAGAAATTAGCAAAGGAATCTGGAATATAATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATAATCCATCAAATAGGGAATCTCCAACCAAACTGCCTAATTCTGATCATCCAATTCTAACAGCCGCTGATAGAAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCATCAGAATCAAAACCATCAGAAACTGAGTCTGCAACAGTATTTACACAAACACACAAGAGACCATCCTGAGACAACCCCAGATCCAGTCCAGACCTCGGTTACTGCCTCTCCATCTGCAGTTACTCAGCCGATCGCCAGCAGCAGATCAATCTCAAGAACACCACTTGCAAGTGCCACGGACAACAATATTATTATTCCTTCTTCGGTTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCACGTTCTCGATGGTTGTGGCGAGTTCATGCCAGGTGGAGAAGATGGAACGCCCGAGGCCTTGAAGTGCGCAGCCTGTGAATGTCATCGGAACTTTCACCGCAAAGAGATGAAAGATGAGCCTTCGCAGCAAGCTTTACCCAGTGGCTTCTTCATCTCTAACTCCGTTAGAAACAATGGCCATCGCACTGATAGGACGCCAGTTCCACTCTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCAGACGAATCTTCCAGTGAAGATCTGAACATGTATCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCCACAACAAATGAAAAAACGATTTAGAACGAAGTTCACACAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAATTGGGGTGGAAGATTCAGAAACATGATGAACTAGATGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGAATATATTTGGTGAAAATCTGAAGAAAAAGATATGTTCTTCTGTCTTTAATGTGCAATGCAATAAAAGGCTACAGCGTCCTCACATGTCTTATACGCGTCGGAATATACGCCTAGAACCTGAAATCACCATAAACCCATGGTCTCTAGGGCGTCTTATATATATATTCTCCAAGCGGGCTTTACAAAACGTCTCCCCCCATCTATCTTCCGTTCAAATTCCCGGCCATAATCTGCCTCCAGGATCAGAAGCTGGGGTGATGGTTCTTTTTCAATACTATTATCATGATAAGCATGAAACAAAGCTGGGCACAGTTTGTGAAATGGGGGTTGGCTTCAAAAAATGGAAGATGCTTCAACTTTACCATACGGCACTACTTCTGACAGGCAACCATAATGCATTTTCAGCTTTATTAGAAGTCATTCTGACCTTTTGA | 1596 | 45.61 | MGSGVDQIKSPSAVITLFSKPTPAASDLGFGRVHLREGVASDGGRKKTAEISKGIWNIMEMRGEDEEIGTPSPLCYNPSNRESPTKLPNSDHPILTAADRRRDHTVPQLHFSHHQNQNHQKLSLQQYLHKHTRDHPETTPDPVQTSVTASPSAVTQPIASSRSISRTPLASATDNNIIIPSSVRYRECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKEMKDEPSQQALPSGFFISNSVRNNGHRTDRTPVPLSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHQSNNGARDLFGQQPQQMKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELDVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQMNIFGENLKKKICSSVFNVQCNKRLQRPHMSYTRRNIRLEPEITINPWSLGRLIYIFSKRALQNVSPHLSSVQIPGHNLPPGSEAGVMVLFQYYYHDKHETKLGTVCEMGVGFKKWKMLQLYHTALLLTGNHNAFSALLEVILTF | 531 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 6058574 | 6063437 | - | Maker00012825 | Lcy1g0708 | 622620 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0708 | 531 | MobiDBLite | consensus disorder prediction | 291 | 321 | - | - | |
Lcy1g0708 | 531 | MobiDBLite | consensus disorder prediction | 139 | 167 | - | - | |
Lcy1g0708 | 531 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 139 | 381 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Lcy1g0708 | 531 | MobiDBLite | consensus disorder prediction | 130 | 167 | - | - | |
Lcy1g0708 | 531 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 184 | 235 | IPR006456 | - | |
Lcy1g0708 | 531 | MobiDBLite | consensus disorder prediction | 249 | 268 | - | - | |
Lcy1g0708 | 531 | SUPERFAMILY | Homeodomain-like | 318 | 384 | IPR009057 | - | |
Lcy1g0708 | 531 | Gene3D | - | 311 | 395 | - | - | |
Lcy1g0708 | 531 | MobiDBLite | consensus disorder prediction | 249 | 263 | - | - | |
Lcy1g0708 | 531 | Pfam | ZF-HD protein dimerisation region | 183 | 235 | IPR006456 | - | |
Lcy1g0708 | 531 | NCBIfam | homeobox domain, ZF-HD class | 323 | 380 | IPR006455 | - | |
Lcy1g0708 | 531 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 185 | 234 | IPR006456 | - | |
Lcy1g0708 | 531 | MobiDBLite | consensus disorder prediction | 289 | 321 | - | - | |
Lcy1g0708 | 531 | FunFam | Zinc-finger homeodomain protein 2 | 313 | 384 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1504 | Lcy-Chr13:33734557 | Lcy1g0708 | Lcy-Chr1:6058574 | 2.91E-53 | dispersed | |
Lcy1g0708 | Lcy-Chr1:6058574 | Lcy1g0823 | Lcy-Chr1:7009942 | 2.87E-47 | dispersed | |
Lcy1g0708 | Lcy-Chr1:6058574 | Lcy13g1976 | Lcy-Chr13:38802672 | 6.33E-62 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19533 | None | None | None | None | Lcy | TF |
Pathway information
