Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0708 ATGGGAAGTGGGGTGGACCAAATAAAGTCCCCTTCTGCAGTCATCACTTTATTCTCCAAACCCACACCTGCGGCTTCCGATCTTGGGTTTGGGCGGGTGCACTTGCGAGAAGGGGTTGCGAGTGATGGAGGACGCAAGAAGACAGCAGAAATTAGCAAAGGAATCTGGAATATAATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATAATCCATCAAATAGGGAATCTCCAACCAAACTGCCTAATTCTGATCATCCAATTCTAACAGCCGCTGATAGAAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCATCAGAATCAAAACCATCAGAAACTGAGTCTGCAACAGTATTTACACAAACACACAAGAGACCATCCTGAGACAACCCCAGATCCAGTCCAGACCTCGGTTACTGCCTCTCCATCTGCAGTTACTCAGCCGATCGCCAGCAGCAGATCAATCTCAAGAACACCACTTGCAAGTGCCACGGACAACAATATTATTATTCCTTCTTCGGTTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCACGTTCTCGATGGTTGTGGCGAGTTCATGCCAGGTGGAGAAGATGGAACGCCCGAGGCCTTGAAGTGCGCAGCCTGTGAATGTCATCGGAACTTTCACCGCAAAGAGATGAAAGATGAGCCTTCGCAGCAAGCTTTACCCAGTGGCTTCTTCATCTCTAACTCCGTTAGAAACAATGGCCATCGCACTGATAGGACGCCAGTTCCACTCTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCAGACGAATCTTCCAGTGAAGATCTGAACATGTATCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCCACAACAAATGAAAAAACGATTTAGAACGAAGTTCACACAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAATTGGGGTGGAAGATTCAGAAACATGATGAACTAGATGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGAATATATTTGGTGAAAATCTGAAGAAAAAGATATGTTCTTCTGTCTTTAATGTGCAATGCAATAAAAGGCTACAGCGTCCTCACATGTCTTATACGCGTCGGAATATACGCCTAGAACCTGAAATCACCATAAACCCATGGTCTCTAGGGCGTCTTATATATATATTCTCCAAGCGGGCTTTACAAAACGTCTCCCCCCATCTATCTTCCGTTCAAATTCCCGGCCATAATCTGCCTCCAGGATCAGAAGCTGGGGTGATGGTTCTTTTTCAATACTATTATCATGATAAGCATGAAACAAAGCTGGGCACAGTTTGTGAAATGGGGGTTGGCTTCAAAAAATGGAAGATGCTTCAACTTTACCATACGGCACTACTTCTGACAGGCAACCATAATGCATTTTCAGCTTTATTAGAAGTCATTCTGACCTTTTGA 1596 45.61 MGSGVDQIKSPSAVITLFSKPTPAASDLGFGRVHLREGVASDGGRKKTAEISKGIWNIMEMRGEDEEIGTPSPLCYNPSNRESPTKLPNSDHPILTAADRRRDHTVPQLHFSHHQNQNHQKLSLQQYLHKHTRDHPETTPDPVQTSVTASPSAVTQPIASSRSISRTPLASATDNNIIIPSSVRYRECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKEMKDEPSQQALPSGFFISNSVRNNGHRTDRTPVPLSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHQSNNGARDLFGQQPQQMKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELDVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQMNIFGENLKKKICSSVFNVQCNKRLQRPHMSYTRRNIRLEPEITINPWSLGRLIYIFSKRALQNVSPHLSSVQIPGHNLPPGSEAGVMVLFQYYYHDKHETKLGTVCEMGVGFKKWKMLQLYHTALLLTGNHNAFSALLEVILTF 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6058574 6063437 - Maker00012825 Lcy1g0708 622620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0708 531 MobiDBLite consensus disorder prediction 291 321 - -
Lcy1g0708 531 MobiDBLite consensus disorder prediction 139 167 - -
Lcy1g0708 531 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 139 381 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy1g0708 531 MobiDBLite consensus disorder prediction 130 167 - -
Lcy1g0708 531 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 184 235 IPR006456 -
Lcy1g0708 531 MobiDBLite consensus disorder prediction 249 268 - -
Lcy1g0708 531 SUPERFAMILY Homeodomain-like 318 384 IPR009057 -
Lcy1g0708 531 Gene3D - 311 395 - -
Lcy1g0708 531 MobiDBLite consensus disorder prediction 249 263 - -
Lcy1g0708 531 Pfam ZF-HD protein dimerisation region 183 235 IPR006456 -
Lcy1g0708 531 NCBIfam homeobox domain, ZF-HD class 323 380 IPR006455 -
Lcy1g0708 531 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 185 234 IPR006456 -
Lcy1g0708 531 MobiDBLite consensus disorder prediction 289 321 - -
Lcy1g0708 531 FunFam Zinc-finger homeodomain protein 2 313 384 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1504 Lcy-Chr13:33734557 Lcy1g0708 Lcy-Chr1:6058574 2.91E-53 dispersed
Lcy1g0708 Lcy-Chr1:6058574 Lcy1g0823 Lcy-Chr1:7009942 2.87E-47 dispersed
Lcy1g0708 Lcy-Chr1:6058574 Lcy13g1976 Lcy-Chr13:38802672 6.33E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19533 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0708 - - - 0.0