Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0708 ATGGGAAGTGGGGTGGACCAAATAAAGTCCCCTTCTGCAGTCATCACTTTATTCTCCAAACCCACACCTGCGGCTTCCGATCTTGGGTTTGGGCGGGTGCACTTGCGAGAAGGGGTTGCGAGTGATGGAGGACGCAAGAAGACAGCAGAAATTAGCAAAGGAATCTGGAATATAATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATAATCCATCAAATAGGGAATCTCCAACCAAACTGCCTAATTCTGATCATCCAATTCTAACAGCCGCTGATAGAAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCATCAGAATCAAAACCATCAGAAACTGAGTCTGCAACAGTATTTACACAAACACACAAGAGACCATCCTGAGACAACCCCAGATCCAGTCCAGACCTCGGTTACTGCCTCTCCATCTGCAGTTACTCAGCCGATCGCCAGCAGCAGATCAATCTCAAGAACACCACTTGCAAGTGCCACGGACAACAATATTATTATTCCTTCTTCGGTTCGATACCGAGAATGTTTGAAGAACCACGCAGCAAGTACTGGAGGCCACGTTCTCGATGGTTGTGGCGAGTTCATGCCAGGTGGAGAAGATGGAACGCCCGAGGCCTTGAAGTGCGCAGCCTGTGAATGTCATCGGAACTTTCACCGCAAAGAGATGAAAGATGAGCCTTCGCAGCAAGCTTTACCCAGTGGCTTCTTCATCTCTAACTCCGTTAGAAACAATGGCCATCGCACTGATAGGACGCCAGTTCCACTCTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCGATGATGATGGCATTTGGAGGAAGCAATGGAGCTCCAGACGAATCTTCCAGTGAAGATCTGAACATGTATCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCCACAACAAATGAAAAAACGATTTAGAACGAAGTTCACACAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAATTGGGGTGGAAGATTCAGAAACATGATGAACTAGATGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGAATATATTTGGTGAAAATCTGAAGAAAAAGATATGTTCTTCTGTCTTTAATGTGCAATGCAATAAAAGGCTACAGCGTCCTCACATGTCTTATACGCGTCGGAATATACGCCTAGAACCTGAAATCACCATAAACCCATGGTCTCTAGGGCGTCTTATATATATATTCTCCAAGCGGGCTTTACAAAACGTCTCCCCCCATCTATCTTCCGTTCAAATTCCCGGCCATAATCTGCCTCCAGGATCAGAAGCTGGGGTGATGGTTCTTTTTCAATACTATTATCATGATAAGCATGAAACAAAGCTGGGCACAGTTTGTGAAATGGGGGTTGGCTTCAAAAAATGGAAGATGCTTCAACTTTACCATACGGCACTACTTCTGACAGGCAACCATAATGCATTTTCAGCTTTATTAGAAGTCATTCTGACCTTTTGA 1596 45.61 MGSGVDQIKSPSAVITLFSKPTPAASDLGFGRVHLREGVASDGGRKKTAEISKGIWNIMEMRGEDEEIGTPSPLCYNPSNRESPTKLPNSDHPILTAADRRRDHTVPQLHFSHHQNQNHQKLSLQQYLHKHTRDHPETTPDPVQTSVTASPSAVTQPIASSRSISRTPLASATDNNIIIPSSVRYRECLKNHAASTGGHVLDGCGEFMPGGEDGTPEALKCAACECHRNFHRKEMKDEPSQQALPSGFFISNSVRNNGHRTDRTPVPLSRHHQLPAVPISSMMMAFGGSNGAPDESSSEDLNMYHQSNNGARDLFGQQPQQMKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELDVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQMNIFGENLKKKICSSVFNVQCNKRLQRPHMSYTRRNIRLEPEITINPWSLGRLIYIFSKRALQNVSPHLSSVQIPGHNLPPGSEAGVMVLFQYYYHDKHETKLGTVCEMGVGFKKWKMLQLYHTALLLTGNHNAFSALLEVILTF 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6058574 6063437 - Maker00012825 Lcy1g0708 622620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0708 531 MobiDBLite consensus disorder prediction 291 321 - -
Lcy1g0708 531 MobiDBLite consensus disorder prediction 139 167 - -
Lcy1g0708 531 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 139 381 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Lcy1g0708 531 MobiDBLite consensus disorder prediction 130 167 - -
Lcy1g0708 531 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 184 235 IPR006456 -
Lcy1g0708 531 MobiDBLite consensus disorder prediction 249 268 - -
Lcy1g0708 531 SUPERFAMILY Homeodomain-like 318 384 IPR009057 -
Lcy1g0708 531 Gene3D - 311 395 - -
Lcy1g0708 531 MobiDBLite consensus disorder prediction 249 263 - -
Lcy1g0708 531 Pfam ZF-HD protein dimerisation region 183 235 IPR006456 -
Lcy1g0708 531 NCBIfam homeobox domain, ZF-HD class 323 380 IPR006455 -
Lcy1g0708 531 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 185 234 IPR006456 -
Lcy1g0708 531 MobiDBLite consensus disorder prediction 289 321 - -
Lcy1g0708 531 FunFam Zinc-finger homeodomain protein 2 313 384 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0708 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1504 Lcy-Chr13:33734557 Lcy1g0708 Lcy-Chr1:6058574 2.91E-53 dispersed
Lcy1g0708 Lcy-Chr1:6058574 Lcy1g0823 Lcy-Chr1:7009942 2.87E-47 dispersed
Lcy1g0708 Lcy-Chr1:6058574 Lcy13g1976 Lcy-Chr13:38802672 6.33E-62 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy7g1989 . 83 291 ZF-HD Transcription Factor Family AT2G02540 55.8 1.5e-49 194.1
Lcy6g1056 . 45 210 ZF-HD Transcription Factor Family AT4G24660 53.3 5.2e-47 185.3
Lcy10g2006 . 1 258 ZF-HD Transcription Factor Family AT5G39760 54.2 3.2e-50 196.4
Lcy10g0467 . 1 256 ZF-HD Transcription Factor Family AT5G39760 60.2 9.4e-50 194.9
Lcy1g0708 . 155 387 ZF-HD Transcription Factor Family AT2G18350 51.3 3.2e-53 206.1
Lcy13g1504 . 51 245 ZF-HD Transcription Factor Family AT5G65410 54.4 5.8e-45 178.7
Lcy10g2006 . 56 255 ZF-HD Transcription Factor Family AT1G69600 51.2 1.1e-47 187.6
Lcy10g0467 . 1 263 ZF-HD Transcription Factor Family AT5G15210 54.5 4.8e-52 202.2
Lcy10g2006 . 6 252 ZF-HD Transcription Factor Family AT5G15210 56.5 4.8e-52 202.2
Lcy7g1989 . 83 294 ZF-HD Transcription Factor Family AT1G14440 51.6 2.1e-51 200.3
Lcy7g1989 . 83 293 ZF-HD Transcription Factor Family AT1G75240 53.7 1.9e-36 150.6
Lcy10g2006 . 16 267 ZF-HD Transcription Factor Family AT3G28920 61.2 2.9e-61 233.0
Lcy10g0467 . 1 258 ZF-HD Transcription Factor Family AT3G28920 59.0 1.3e-56 217.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19533 None None None None Lcy TF