Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0725 ATGCCGGCCGATTTCGACAATTCCTCGCCGGCCTCCGGCGAACCCAGTGTCTCCTCCGCTGGAGCCGCCCTTCCGCCGCCCAAATCCGCCGCTAAGAAAAAGCGAAATCTACCCGGAATGCCAGATCCGGATGCGGAAGTGATTGCTCTGTCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTTCACCGGCGAGGTCACAATCTTCCATGGAAGCTCCGGCAGAGGTCCAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGCCTTCTTGTGTTCATCATGATCCCTCTAGAGCTCTCGGTGATCTGACTGGGATTAAGAAGCACTTTTGTAGAAAGCACGGTGAGAAGAAGTGGAAATGCGATAAGTGTTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTATAAATGCGATTGTGGTACTCTGTTTTCCAGGAGGGATAGCTTCATTACGCATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAAGCTCAGCCTCAGTCTTTGGTGGACAAACCAGTTTCTAATTCTGAGCCGAAAGCTCGTTCTCAGAAGGCGGTGGAGCCAAACCCGGAGCCATCGCCGACGCCTCCGGCCGCATCATCTCCTCCGCAGTCAACTTGTGTTCTGTCATCTGTTATGCCGATTCAGAGGGAGAGCCAAGATCGACCGGAGAATCCCCCGCCGTATAACGAAGAAGCACCAGCTACGACGGGCATGAGTGGTAGCTGCAGCAGTAGCAAGAGCCCCAGCAGCAACAGCAGTTCGAGTAGCCGATTTGCTAGCTTGTTCGCGTCCACAACTACATCAATAAGCCTGCAACCTCCTCAACCGCCGGCGTTTACTGACTTAATACACGCTATGGCTTGTTCGGATCACTCGTCCGACTATGCTCCAACGACGACTACCGAACCTATTTCTCTATGTCTTGCAACTAGCCATGGGGCATCAATTTTTGGGGCTGCTAGCCAAGGCCTCCGGCAGTACACTCCAACTCCACAACCTGCAATGTCCGCCACTGCATTGCTACAAAAGGCAGCTCAAATGGGAGCAGCAGCATCAAACGCCTCGTTACTTCGCGGATTGGGCTTAGTACCGTCCTCTTCGGCTGCACCGCAAGAGAGCTTGCCATGGAATCAAAGGCAAGTCGAACCCGATGGCATCTCGATCGCAGCAGGCCTTGGACTCGGACTCCCTTGCGATGGAAACTCCGGATTGAAGGAACTAATGAGAGGGAACCATTCCATATTTGCTCCGAAACACACCACCCTCGACTTCCTCGGACTGGGAATGGCAGCCGGTGGCAGCCCCAACAGCGGCCTGGCTGCGCTAATCACGTCGATAGGCGGGAGCGTGGACGTCACCGCAACAACCGGATCGTACGGAGGTGGTGACATATCCAGCAAAGACATGAAGAGAAAGAATTGA 1521 53.12 MPADFDNSSPASGEPSVSSAGAALPPPKSAAKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPQSLVDKPVSNSEPKARSQKAVEPNPEPSPTPPAASSPPQSTCVLSSVMPIQRESQDRPENPPPYNEEAPATTGMSGSCSSSKSPSSNSSSSSRFASLFASTTTSISLQPPQPPAFTDLIHAMACSDHSSDYAPTTTTEPISLCLATSHGASIFGAASQGLRQYTPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVPSSSAAPQESLPWNQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSIFAPKHTTLDFLGLGMAAGGSPNSGLAALITSIGGSVDVTATTGSYGGGDISSKDMKRKN 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6207818 6210222 + Maker00012548 Lcy1g0725 622637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0725 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 463 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy1g0725 506 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 199 - -
Lcy1g0725 506 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Lcy1g0725 506 MobiDBLite consensus disorder prediction 199 214 - -
Lcy1g0725 506 Gene3D Classic Zinc Finger 41 108 - -
Lcy1g0725 506 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Lcy1g0725 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Lcy1g0725 506 SMART c2h2final6 61 83 IPR013087 -
Lcy1g0725 506 SMART c2h2final6 102 132 IPR013087 -
Lcy1g0725 506 SMART c2h2final6 137 157 IPR013087 -
Lcy1g0725 506 MobiDBLite consensus disorder prediction 195 289 - -
Lcy1g0725 506 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Lcy1g0725 506 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Lcy1g0725 506 MobiDBLite consensus disorder prediction 234 250 - -
Lcy1g0725 506 Gene3D Classic Zinc Finger 115 195 - -
Lcy1g0725 506 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lcy1g0725 506 MobiDBLite consensus disorder prediction 267 289 - -
Lcy1g0725 506 MobiDBLite consensus disorder prediction 1 45 - -
Lcy1g0725 506 FunFam protein indeterminate-domain 12-like 40 108 - -
Lcy1g0725 506 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2000 Lcy-Chr13:38981648 Lcy1g0725 Lcy-Chr1:6207818 1.18E-109 dispersed
Lcy1g0725 Lcy-Chr1:6207818 Lcy1g1384 Lcy-Chr1:13398972 8.96E-108 dispersed
Lcy1g0725 Lcy-Chr1:6207818 Lcy1g0727 Lcy-Chr1:6217705 8.22E-259 proximal
Lcy10g1583 Lcy-Chr10:40193461 Lcy1g0725 Lcy-Chr1:6207818 1.02E-69 transposed
Lcy3g1572 Lcy-Chr3:42811765 Lcy1g0725 Lcy-Chr1:6207818 8.79E-106 transposed
Lcy5g2598 Lcy-Chr5:48629609 Lcy1g0725 Lcy-Chr1:6207818 2.16E-67 transposed
Lcy1g0725 Lcy-Chr1:6207818 Lcy6g0950 Lcy-Chr6:9845402 7.53E-119 wgd
Lcy1g0725 Lcy-Chr1:6207818 Lcy9g2183 Lcy-Chr9:46486329 1.19E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19536 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0725 K25869 - csv:101217597 795.808