Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0727 ATGCCGGCCGATGTCGATGATTCGTCCATAGCTTCAGGGGAGGCTAGCGTTTCTTCTCCAGGAGCGAAATCTGCCACTAAGAAAAAGCGAAATCTACCAGGAATGCCAGATCCGGAAGCTGAAGTAATTGCTCTATCCCCGAAGACCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGTAACAAGGGGTTTCAGAGGGATCAGAATCTTCAGCTTCACCGGCGAGGTCACAACCTTCCATGGAAGCTCCGGCAGAGGACCAGTAAGGAGGTCAGGAAGAAGGTCTATGTCTGCCCTGAGCCTTCTTGTGTTCATCATGATCCATCTAGAGCTCTCGGTGATCTGACCGGGATTAAGAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGATAAATGTTCGAAGAAGTACGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGGGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGTGCAAAAGCTCAGCCTAAGCCGGTGTGTCCACCGGATTCGGACTCCGACCCGAAAGACGGTTCTCAGACGGCGGTGGCGAAACTGAATCCAGAGCCTTCTCCGCCCCCTCCGCCATCACCACCACGGGCTCCATCTCCTCCACAGTCAACTGGTGAGCTAACAACTGTGTTGCCTGTTCCAAGTCAAGAGCTGCCAGAGAATCCTTCCCAATGTATCGAAGAAGCACCGGGTACAACGGTTTTGAGTGCGAGCAGCAGCAGCAGCAAGAGCACGAGCAGCAATAGCAGTACGAGAAGTAGCGGATTCGCTGGCTTATTTGCTTCCACGACTACGTCGATAAGCCTTCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCATCAGACTATGCACCATCCACAACCATCGAACCTATTTCTCTGTGTCTTGCAATGAATCAAGGGCCACCGATGTTCGGAACTGCCAGCCAAGACCTTCGACAGTACGCACCGACGCCGCAGCCTGCAATGTCCGCCACAGCACTACTCCAAAAAGCTGCTCAAATGGGTGCAGCAGCATCAAATGCCTCGTTACTTCGCGGTTTGGGCTTAGTATCCTCTTCCTCTTCAGCTGCCCAGCAAGAGAGCTTGCCATGGAACCACCAGAGGCAAGTTGAACCGGATGGCATCTCGATCGCTGCAGGGCTCGGACTCGGACTACCCTGTGATGGAAACTCCGGATTGAAGGAACTAATGAGAGGAAACCATTCCATGTTTGCTCCAAAACACACCACCCTCGATTTCCTCGGACTGGGAATGGCAGCTGGAGGCAGCCCCAACAGTGGCCTGGCTGCTCTAATTACATCAGTTGGCAGCGGCGTAGACGTGACCACGACACCCCGATCATACAGCAACGGTGACATATCCGGCAACGACATGAACAGAAGCAACTGA 1521 51.87 MPADVDDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKAQPKPVCPPDSDSDPKDGSQTAVAKLNPEPSPPPPPSPPRAPSPPQSTGELTTVLPVPSQELPENPSQCIEEAPGTTVLSASSSSSKSTSSNSSTRSSGFAGLFASTTTSISLQPPRPPAFTDLMQAMACSDRSSDYAPSTTIEPISLCLAMNQGPPMFGTASQDLRQYAPTPQPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSSSAAQQESLPWNHQRQVEPDGISIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVTTTPRSYSNGDISGNDMNRSN 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6217705 6221131 + Maker00012137 Lcy1g0727 622639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0727 506 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 194 - -
Lcy1g0727 506 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Lcy1g0727 506 MobiDBLite consensus disorder prediction 11 25 - -
Lcy1g0727 506 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Lcy1g0727 506 MobiDBLite consensus disorder prediction 265 287 - -
Lcy1g0727 506 Gene3D Classic Zinc Finger 110 190 - -
Lcy1g0727 506 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 463 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lcy1g0727 506 MobiDBLite consensus disorder prediction 216 234 - -
Lcy1g0727 506 FunFam protein indeterminate-domain 12-like 35 103 - -
Lcy1g0727 506 MobiDBLite consensus disorder prediction 1 39 - -
Lcy1g0727 506 Gene3D Classic Zinc Finger 35 102 - -
Lcy1g0727 506 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Lcy1g0727 506 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Lcy1g0727 506 MobiDBLite consensus disorder prediction 190 241 - -
Lcy1g0727 506 MobiDBLite consensus disorder prediction 486 506 - -
Lcy1g0727 506 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Lcy1g0727 506 SMART c2h2final6 132 152 IPR013087 -
Lcy1g0727 506 SMART c2h2final6 97 127 IPR013087 -
Lcy1g0727 506 SMART c2h2final6 56 78 IPR013087 -
Lcy1g0727 506 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Lcy1g0727 506 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0296 Lcy-Chr11:4669277 Lcy1g0727 Lcy-Chr1:6217705 3.30E-94 dispersed
Lcy1g0727 Lcy-Chr1:6217705 Lcy9g2183 Lcy-Chr9:46486329 9.54E-135 dispersed
Lcy1g0725 Lcy-Chr1:6207818 Lcy1g0727 Lcy-Chr1:6217705 8.22E-259 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19537 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0727 K25869 - csv:101217597 698.353