Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0729 ATGGGGACAGGAGAAGAGGGGACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCTCAGGAAATACCCCAAACACCTTCATTTCCTGATTGGTCGAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCTCCCTTCTTTGCATCCACTGTTGCTTCTCCAACTCCCCACCCTTACATTTGGGGAAGTCAGCATCATATGATTCCACCTTATGGGACTCCAGTACCATATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACTGTGACTCCTGGTTCTGCACCAATTAATGCAGAATATGAAGGGAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGTACGTCCGGAAATACTGGTTCAGGTGGTGGTAGGACTGGGGAAAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGGTTCTCAAAGTGCTGAAAGTGGTACTGAGGGCTCATCAGAAGGTAGTGATGAGAATGCTAACCATCAGGAATTTGCTGCAAATAAGAAGGGAAGCTTCAACCAGATGCTGGCAGATGGAGCTAATGCACAAAACACCACGGGTGGACCAAATACCAAATCTTCAGTGACTGGGAAACCCATCACCTCCGTTCCTGCAACTAATCTCAACATGGGAATGGATTTGTGGAATAACACCACGGCTGCCTCAGGGGCTGCAAAAGCAAGAGCAAATGCCGTTTCCTCAGCTATTGTTCCAGCACCGATGGTTGGTCGTGATGGTGTGATGCCCGAACAATGGGTTCAAGATGAACGCGAGCTAAAAAGACAGAAAAGGAAACAATCTAACCGAGAGTCTGCCCGGAGGTCAAGATTACGTAAGCAGGCGGAGTGTGAAGAATTACAGGCGAGAGTGCAGACATTGAACAACGAGAACCGTACTCTCAGGGATGAGCTACAGAGGCTTTCCGAGGAATGTGAGAAGCTAACATCTGAAAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGACCGGAGGCATTAGCTAACTTTGAAAAAGGAACTGCTGCTACTCCGGCTGCCTCCTCTCGTGGCGGCGAGGGTAACAACTAA 1101 47.96 MGTGEEGTPSKTSKPPSSSQEIPQTPSFPDWSSSMQAYYGAGATPPFFASTVASPTPHPYIWGSQHHMIPPYGTPVPYPAIYPPGGVYAHPNITVTPGSAPINAEYEGKSPDGKERASKKSKGTSGNTGSGGGRTGESGKVASSSGNDGGSQSAESGTEGSSEGSDENANHQEFAANKKGSFNQMLADGANAQNTTGGPNTKSSVTGKPITSVPATNLNMGMDLWNNTTAASGAAKARANAVSSAIVPAPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALANFEKGTAATPAASSRGGEGNN 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6231076 6235320 - Maker00013001 Lcy1g0729 622641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0729 366 MobiDBLite consensus disorder prediction 122 169 - -
Lcy1g0729 366 Coils Coil 279 334 - -
Lcy1g0729 366 Pfam bZIP transcription factor 266 328 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0729 366 Pfam G-box binding protein MFMR 1 93 IPR012900 -
Lcy1g0729 366 MobiDBLite consensus disorder prediction 346 366 - -
Lcy1g0729 366 PANTHER G-BOX-BINDING FACTOR 3-RELATED 17 346 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Lcy1g0729 366 MobiDBLite consensus disorder prediction 189 210 - -
Lcy1g0729 366 MobiDBLite consensus disorder prediction 266 288 - -
Lcy1g0729 366 SUPERFAMILY Leucine zipper domain 269 325 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0729 366 SMART brlzneu 266 330 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0729 366 Gene3D - 269 324 - -
Lcy1g0729 366 FunFam BZIP transcription factor 268 319 - -
Lcy1g0729 366 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 268 331 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0729 366 MobiDBLite consensus disorder prediction 1 35 - -
Lcy1g0729 366 MobiDBLite consensus disorder prediction 99 169 - -
Lcy1g0729 366 CDD bZIP_plant_GBF1 271 321 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0729 366 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 273 288 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2026 Lcy-Chr11:43807791 Lcy1g0729 Lcy-Chr1:6231076 9.97E-25 dispersed
Lcy12g1977 Lcy-Chr12:41161771 Lcy1g0729 Lcy-Chr1:6231076 1.39E-23 dispersed
Lcy1g0729 Lcy-Chr1:6231076 Lcy6g2255 Lcy-Chr6:47216578 5.38E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19538 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0729 K09060 - csv:101217128 605.134