Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0730 ATGGCGGGCCGTTCCGATGAAGAACACTCTTGCTCTAACTCCAACTCCTTCAAGACAATTGCTGGTGCTTTCAGTCGGTTCATTGGGGACGATGATTCTGAAGATTTGGGCTCCGAGTTCGTCTTCAAGATCGAACCTAGTTTGCTCATTGACCCTTGTTGTTTGAAGATTGGTGAAGTTATTGGCGAAGGTTCATGCTCCATTGTGTACGATTATCAGCCTGTTGCCGTGAAGATTATACAGCCAAGCAGAACATCAGCTATAAGTACTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTACGTTGCTATCGAGAGTGAATCATGAGAACGTTATTCAGCATTACAAAGCATACATGTTGATCCATGCCTCAAGTATGGTTGCTGATACCCCATTCTACTTAAAACAGTTCATTGGCGCTTCCATAGAGCCGACATTGATGATAATCACCGAGCTCATGAGAGGTGGAACACTCCAAAAGTACTTGTGGAGCATCCGGCCAGAGACCCCAGATCTGAAGGTTTCCTTAAGTTTTGCTCTAGATCTATCACGAGTAATGGCATACTTACATGCAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTGACAGAAGACAAGCAACGGGTTAAGCTGGCTGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGCTATTTAGCATTGATCCATTGCCTGTTGGAGGTAAGAAATGCTATGATCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTATGGGAATTGATGACAAACAAGACTCCATTCAAGGGCAGAAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCTCCTCTCTTGCAGTCATGTTGGGCCGAGGATCCCAATGGCCGTCCAGAATTTACAGAAGTCATAGATTCTCTAAGCAATCTTCTTCAAACTTTTGCCTTAAAAGAATCTTCACTTCCTAACATGGTGGAAACAGAGGAGGCGGTCGAGGGAGCATCAGACACATCGTCTTCTCTGAGCAAGAGGGAGCACAAGCCTGGAAGACATAGAAACTATTCATTCTGCCTCAACTGTTGCTACAACTTCTGCTTGTCTGATTGA 1182 44.5 MAGRSDEEHSCSNSNSFKTIAGAFSRFIGDDDSEDLGSEFVFKIEPSLLIDPCCLKIGEVIGEGSCSIVYDYQPVAVKIIQPSRTSAISTEKKERFQREVTLLSRVNHENVIQHYKAYMLIHASSMVADTPFYLKQFIGASIEPTLMIITELMRGGTLQKYLWSIRPETPDLKVSLSFALDLSRVMAYLHANGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGGKKCYDHKADVYSFSIILWELMTNKTPFKGRNNVMVAYATAKNIRPSLEEIPEDIAPLLQSCWAEDPNGRPEFTEVIDSLSNLLQTFALKESSLPNMVETEEAVEGASDTSSSLSKREHKPGRHRNYSFCLNCCYNFCLSD 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6240136 6243922 - Maker00013040 Lcy1g0730 622642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0730 393 CDD STKc_MAP3K-like 61 332 - -
Lcy1g0730 393 ProSiteProfiles Protein kinase domain profile. 55 336 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0730 393 MobiDBLite consensus disorder prediction 352 374 - -
Lcy1g0730 393 Pfam Protein kinase domain 57 330 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0730 393 SUPERFAMILY Protein kinase-like (PK-like) 53 345 IPR011009 -
Lcy1g0730 393 Gene3D Transferase(Phosphotransferase) domain 1 52 370 - -
Lcy1g0730 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0730 393 PANTHER SERINE-THREONINE PROTEIN KINASE 34 336 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy1g0730 393 SMART serkin_6 55 339 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0730 393 PRINTS Tyrosine kinase catalytic domain signature 303 325 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0730 393 PRINTS Tyrosine kinase catalytic domain signature 188 206 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0730 393 PRINTS Tyrosine kinase catalytic domain signature 261 283 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0730 393 PRINTS Tyrosine kinase catalytic domain signature 150 163 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0730 Lcy-Chr1:6240136 Lcy2g0117 Lcy-Chr2:885342 5.43E-99 dispersed
Lcy1g0730 Lcy-Chr1:6240136 Lcy6g0958 Lcy-Chr6:9927952 1.21E-12 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65638 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0730 - - - 0.0