Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0731 ATGGCCGCTGTCAATCTCCGACCCGACGACGACAATACAATACTCATCTCTCACCTCTACAACCCCGAAATTTACACCCAAATGCTTCCCCAACAACAAGGTACGGCGGCGGAGGGAGCTAAGCCGACGAAGAGACGGCGGAGGAGGAGCAAAGCGAAGGAGGCGGGCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATGAATTTTGGGAACGAGCACAAATTGGAATCAGAGAGGAAAGATCGGTTGGCTTCTGAACTGGGACTTGATCCACGGCAGGTCGCCGTCTGGTTTCAGAACCGCCGGGCGCGGTGGAAGAACAAGAAGCTTGAAGAGGAATATTCCACTCTCAGAAAAGCTCATGATTCTGTTCTTCTCCAAAAATCCCATCTCGAATCTGAGATGGTGAAACTCAAAGAGCAATTGACACAAGCGAAGAATGAGATACAACAATTAGTAGAACGAAGCGAGAGGATTTCGAGTAACAGCCCGACTTCTTCGGTGACGATGGACGCAGTGCAACCGCCGTCTTTGGGAGATCAGTTATTTTTGGAAGAATATGAAGATGTATTCTATTGCATGCAAGAGAACAATTACAATCAAGGAATGGAGTGGCTTAATCTTTTTATGTAG 660 48.48 MAAVNLRPDDDNTILISHLYNPEIYTQMLPQQQGTAAEGAKPTKRRRRRSKAKEAGGAAGLKKRKLSSEQVKLLEMNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLRKAHDSVLLQKSHLESEMVKLKEQLTQAKNEIQQLVERSERISSNSPTSSVTMDAVQPPSLGDQLFLEEYEDVFYCMQENNYNQGMEWLNLFM 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6247139 6249184 - Maker00013555 Lcy1g0731 622643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0731 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 170 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Lcy1g0731 219 MobiDBLite consensus disorder prediction 30 64 - -
Lcy1g0731 219 SUPERFAMILY Homeodomain-like 62 127 IPR009057 -
Lcy1g0731 219 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy1g0731 219 CDD homeodomain 62 118 IPR001356 GO:0003677(InterPro)
Lcy1g0731 219 FunFam homeobox-leucine zipper protein ATHB-40 56 125 - -
Lcy1g0731 219 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677(InterPro)
Lcy1g0731 219 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677(InterPro)
Lcy1g0731 219 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Lcy1g0731 219 Gene3D - 56 125 - -
Lcy1g0731 219 SMART HOX_1 60 121 IPR001356 GO:0003677(InterPro)
Lcy1g0731 219 Coils Coil 109 171 - -
Lcy1g0731 219 Pfam Homeodomain 63 116 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0731 Lcy-Chr1:6247139 Lcy4g1025 Lcy-Chr4:18392494 1.26E-44 dispersed
Lcy1g0731 Lcy-Chr1:6247139 Lcy6g0947 Lcy-Chr6:9793608 1.02E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19539 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0731 K09338 - csv:101216890 325.094