Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g0734 | ATGGGGATGTGGGGTTTGGAAAAGGCCGTTAAGACAGTGCGGGGACTCACCATGCTAAAGTGCTTATTGGTCATAGCTTCGTTGATCCTGATCTCCTCCGCCTTTCCACAACAACCTGACGTCCCTCCAAAAGATAAATGGCTCACTTTGAGAGGACAAGTGCCACTTGTAATAGCAAGAGGTGGGTTATCTGGAGTGTTTCCAGAATCAAGCCCATATGCAAATCAATTGGCAATAGTTTCAAGTTTAGGGAGCACAGCTTTGTACTGCAACGTGCAACTTACCAAAGATGGAGTAGGCATTTGCTTGACTGATATTAGGCTTCAAAACTCAACCAACATTGAGGATGTCTTCCCTAAAGCTCGTAAGAGCTACAAAATCAATGGCAAGGTTATCAAAGGATGGTTTTCTGTTGATTACATGGCTGAGGCTCTCCTTAACAGCGTCGCCATGATTCAAAGTGTCTTGTCCCGACCTAGTATCTACGATAATACTTTGCCGATTGCTGCCGTTGAAGACATCATCGGAATCAAACCGGATCAAGTTTGGTTGAACGCAGATCACGAAGCATTCTACCAAGAGCACAATCTGAGTGTGTCATCATACATTCAAAAGGCATTGGAATTGAAACTGATGCGCGTAAACTTTGTGTCATCTTCTGAGATTGGAATATTGAAAGGCCTAAGTGGGAGTGTGAACAAAGGCAGACCAAAGCTGATCTTCCGATTCTTAGAAGCCAATGAAATAGAGCCAACAACAAGTAAAACATACGGTGCATTGGCTCAAGAACTGGCCATGATAAAGACATTTGCCGCTGGCATTCTCATCCGCAAAGAATTCATTTGGCCAATCGGTAAAGACGGTTATCTGCAGCCTGCAACAACCCTTGTCAAGGATGCCCACAAGCTTGGCTTGGAAGTTTATGCCTCTGGCTTTGCAAACGATGCCATGGTTGGTTACAATTATAGCTATGATCCAATCAGGGAGTACCTTCAGTTTATTGACAATGGCCAATTTGCTGTTGATGGGGTGCTTTCTGATTTCCCTCCCTCTGCTTCTCAAGCCATTGCCTGCTATTCCAGCATTCGGAACAAAGGCAAGCCTCTGCCCGGAATACCGGAAACATTGGTGATAAGCAGCAACGGAGCAAGTGGGGATTATCCAGGCTCAACAGACCTTGCATATCAAGGAGCAATTGATGCTGGGGCTGATATTATTGATTGTACAGTTCAATTAACAAAAGATGGAGTTGCTTTCTGCACGGAAGTAGCTGATCTTTTGACAAGTACCACTGTCATCACTGATTTCTCTGCTCGAACTACAGCCGTTCCTGAAATTCAACGAGAACCTGGAATCTTCTCTTTTGATCTTACTTGGGCTGAGATTCTAACTCTCAAGCCTCAAATCATAAGCCCTTTCATAGCTTCTGGGCTGACCAGAAATCCTGCCTTTAAGAACAAGGGCAAGCTTCTGAGCCTTTCTGAGTTTCTCGAGTTCGCTAAAGCCAAAGCTGTTACTGGGATTATGATCAGCATCCAAAACGCAGCCTACTTGGCTTCGAAGAAAGGCTTGGACATGGTGGGAATCGTATCCACGGCCCTGGTCAACGCCACTTTCGACAAGCAATCAACACAAAGAGTTTTCATTAAATCAGATGACACTTCTGTGCTGTCCGTCTTCAAAACCAACTTCCCAAATTTCACAAGAGTTTTGAATTTTGAGACCAAGTTTGGAAGTGTCCCTAAAAATGTCCTTGAAGAGATCAAACGCTATGCTCAAACTGTCGCCATTCCTCGTGCCTCTGTCATTGAAATAACCAACTATTTCACCACTGGCCTCACTGAAGTCGTCGCTCAAATGAAGGCTGCCAATCTCTCCGTCTTTGTTTATGTCATGAGGAACGAATACGTCTCCTTGGCCTTTGATTTCTACTCCGAAGCCTCCATGGAGGTCTCTACCTACGCCGACTACTTCCACGTCGATGGCATTATCACCGAATTCCCCAATACTGCAAAACGATACCTGACGTGTCCATGTCGACCTGTCCAAGCGGACCTGGATCCAAATTTATATGTAATCTTACCAGCAGAAGTTGGTGCATTGTTGCAAATAGCGCCTCCAAGGGTTAGACCACAAACCGATCCTCCATTGCCACCATTGGAGAGCAAAGATATTGCTGACCCGCCGCTCCCACCGTTGTCCGAAGGGTCGTCCACCCCCAATTCCACCGCCGGCGGGCCTGCCGCCGCCGCCACCCCATCAACCGCTGTAACAAATGTTGCTAACTTGTTTATTTCTCTACTCTCAGTTGCTGTGCTCACCTTCTTACACTCCCACACTGCACTGTAA | 2349 | 46.02 | MGMWGLEKAVKTVRGLTMLKCLLVIASLILISSAFPQQPDVPPKDKWLTLRGQVPLVIARGGLSGVFPESSPYANQLAIVSSLGSTALYCNVQLTKDGVGICLTDIRLQNSTNIEDVFPKARKSYKINGKVIKGWFSVDYMAEALLNSVAMIQSVLSRPSIYDNTLPIAAVEDIIGIKPDQVWLNADHEAFYQEHNLSVSSYIQKALELKLMRVNFVSSSEIGILKGLSGSVNKGRPKLIFRFLEANEIEPTTSKTYGALAQELAMIKTFAAGILIRKEFIWPIGKDGYLQPATTLVKDAHKLGLEVYASGFANDAMVGYNYSYDPIREYLQFIDNGQFAVDGVLSDFPPSASQAIACYSSIRNKGKPLPGIPETLVISSNGASGDYPGSTDLAYQGAIDAGADIIDCTVQLTKDGVAFCTEVADLLTSTTVITDFSARTTAVPEIQREPGIFSFDLTWAEILTLKPQIISPFIASGLTRNPAFKNKGKLLSLSEFLEFAKAKAVTGIMISIQNAAYLASKKGLDMVGIVSTALVNATFDKQSTQRVFIKSDDTSVLSVFKTNFPNFTRVLNFETKFGSVPKNVLEEIKRYAQTVAIPRASVIEITNYFTTGLTEVVAQMKAANLSVFVYVMRNEYVSLAFDFYSEASMEVSTYADYFHVDGIITEFPNTAKRYLTCPCRPVQADLDPNLYVILPAEVGALLQIAPPRVRPQTDPPLPPLESKDIADPPLPPLSEGSSTPNSTAGGPAAAATPSTAVTNVANLFISLLSVAVLTFLHSHTAL | 782 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 6282429 | 6286784 | + | Maker00013305 | Lcy1g0734 | 622646 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g0734 | 782 | FunFam | Glycerophosphodiester phosphodiesterase GDPDL3 | 373 | 675 | - | - | |
| Lcy1g0734 | 782 | ProSiteProfiles | GP-PDE domain profile. | 375 | 675 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lcy1g0734 | 782 | Gene3D | Phosphatidylinositol (PI) phosphodiesterase | 54 | 356 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lcy1g0734 | 782 | Gene3D | Phosphatidylinositol (PI) phosphodiesterase | 374 | 676 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lcy1g0734 | 782 | MobiDBLite | consensus disorder prediction | 710 | 751 | - | - | |
| Lcy1g0734 | 782 | FunFam | Glycerophosphodiester phosphodiesterase GDPDL3 | 53 | 355 | - | - | |
| Lcy1g0734 | 782 | Pfam | Glycerophosphoryl diester phosphodiesterase family | 382 | 670 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lcy1g0734 | 782 | MobiDBLite | consensus disorder prediction | 710 | 726 | - | - | |
| Lcy1g0734 | 782 | MobiDBLite | consensus disorder prediction | 736 | 751 | - | - | |
| Lcy1g0734 | 782 | CDD | GDPD_SHV3_repeat_1 | 55 | 355 | - | - | |
| Lcy1g0734 | 782 | SUPERFAMILY | PLC-like phosphodiesterases | 54 | 355 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lcy1g0734 | 782 | PANTHER | GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE | 19 | 767 | - | GO:0008889(PANTHER) | |
| Lcy1g0734 | 782 | CDD | GDPD_SHV3_repeat_2 | 376 | 674 | - | - | |
| Lcy1g0734 | 782 | ProSiteProfiles | GP-PDE domain profile. | 55 | 356 | IPR030395 | GO:0006629(InterPro)|GO:0008081(InterPro) | |
| Lcy1g0734 | 782 | SUPERFAMILY | PLC-like phosphodiesterases | 374 | 675 | IPR017946 | GO:0006629(InterPro)|GO:0008081(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0734 | Lcy-Chr1:6282429 | Lcy9g1148 | Lcy-Chr9:35473643 | 6.87E-141 | dispersed |
Pathway information