Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0738 ATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGACGGCGGAGGGCCATTGCTGCTAAGATCTACACTGGCCTCAGAGCTCAGGGGAACTATAAGCTCCCCAAGCACTGTGACAACAACGAGGTCTTGAAGGCGCTCTGTAATGAAGCTGGTTGGGTGGTTGAAGAAGATGGCACCACTTATCGCAAGGTTCTGCGATTCCTTTCTCTTTTGATATTTCGTACTTATTGTTCGATTTTTGAATGTGGTGATTGTGGTCTGTTCTCCAGATCTGGATGTAAGCCACCTCCGATTGATATTGGCACTTCTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCAAGTCCTGTACCATCCTACCATGCCAGCCCTTCTTCATCCTCTTTTCCGAGCCCAACTCGATTTGATGGAAATCCATCTTCTTATCTTTTGCCATTCCTTCAAAATATAACCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCAAACAGTGCACCTGTTACACCACCTCTTTCTTCCCCAACATCAAGAGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCGAATAGCTATGTAACGTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCAGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTGGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTAGCACCTTCTGTGGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTGAGTCAGCAGAACTCTCTCCAGGATGCAGTTGACAGACATGGAGCAATGGGCTGGAGTGCTGCATCTGATAGGGGACGAGGCACTGAGTTTGAATTTGAGAAATTTGAGAGTGGAAAAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACACTTGGGAGTGGAAAGGCCCGTGGGTGGACGGTGGAGAAGTCTCCGATGAATTTAGCTGAGAGGGTGGCAATTCTGGAGGGCATCAGAGGGTTAAATCTTGAAATACAATGTACCTATGCGACTGAGCTTTTTCTGCTGTGTGGTGCCCTTCTGTTGTGTTGTGGGTCAGATGAGCAAAGAATCCAAGGGCAGAATGGGGGGGCCTCATAA 1227 48.82 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKVLRFLSLLIFRTYCSIFECGDCGLFSRSGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNITSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWSAASDRGRGTEFEFEKFESGKVKPWEGERIHEVGVDDLELTLGSGKARGWTVEKSPMNLAERVAILEGIRGLNLEIQCTYATELFLLCGALLLCCGSDEQRIQGQNGGAS 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6323803 6326266 - Maker00012158 Lcy1g0738 622650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0738 408 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 157 IPR008540 -
Lcy1g0738 408 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 6 76 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lcy1g0738 408 MobiDBLite consensus disorder prediction 10 24 - -
Lcy1g0738 408 MobiDBLite consensus disorder prediction 184 199 - -
Lcy1g0738 408 MobiDBLite consensus disorder prediction 1 24 - -
Lcy1g0738 408 MobiDBLite consensus disorder prediction 184 207 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2004 Lcy-Chr13:39013944 Lcy1g0738 Lcy-Chr1:6323803 1.68E-102 dispersed
Lcy1g0738 Lcy-Chr1:6323803 Lcy5g1802 Lcy-Chr5:40762427 2.19E-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19540 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0738 K14503 - csv:101216171 563.148