Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0738 ATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAGGAAAGGGAGAACAATAAGAGGAGGGAGAGACGGCGGAGGGCCATTGCTGCTAAGATCTACACTGGCCTCAGAGCTCAGGGGAACTATAAGCTCCCCAAGCACTGTGACAACAACGAGGTCTTGAAGGCGCTCTGTAATGAAGCTGGTTGGGTGGTTGAAGAAGATGGCACCACTTATCGCAAGGTTCTGCGATTCCTTTCTCTTTTGATATTTCGTACTTATTGTTCGATTTTTGAATGTGGTGATTGTGGTCTGTTCTCCAGATCTGGATGTAAGCCACCTCCGATTGATATTGGCACTTCTGCAAACATGAGTGCCTGTTCCTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCAAGTCCTGTACCATCCTACCATGCCAGCCCTTCTTCATCCTCTTTTCCGAGCCCAACTCGATTTGATGGAAATCCATCTTCTTATCTTTTGCCATTCCTTCAAAATATAACCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCAAACAGTGCACCTGTTACACCACCTCTTTCTTCCCCAACATCAAGAGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCGAATAGCTATGTAACGTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCTTCAAGTCCTACAAGATGCCACCATCTTACACCAGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTGGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTAGCACCTTCTGTGGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTGAGTCAGCAGAACTCTCTCCAGGATGCAGTTGACAGACATGGAGCAATGGGCTGGAGTGCTGCATCTGATAGGGGACGAGGCACTGAGTTTGAATTTGAGAAATTTGAGAGTGGAAAAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACACTTGGGAGTGGAAAGGCCCGTGGGTGGACGGTGGAGAAGTCTCCGATGAATTTAGCTGAGAGGGTGGCAATTCTGGAGGGCATCAGAGGGTTAAATCTTGAAATACAATGTACCTATGCGACTGAGCTTTTTCTGCTGTGTGGTGCCCTTCTGTTGTGTTGTGGGTCAGATGAGCAAAGAATCCAAGGGCAGAATGGGGGGGCCTCATAA 1227 48.82 MTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKVLRFLSLLIFRTYCSIFECGDCGLFSRSGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNITSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWSAASDRGRGTEFEFEKFESGKVKPWEGERIHEVGVDDLELTLGSGKARGWTVEKSPMNLAERVAILEGIRGLNLEIQCTYATELFLLCGALLLCCGSDEQRIQGQNGGAS 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6323803 6326266 - Maker00012158 Lcy1g0738 622650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0738 408 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 157 IPR008540 -
Lcy1g0738 408 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 6 76 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Lcy1g0738 408 MobiDBLite consensus disorder prediction 10 24 - -
Lcy1g0738 408 MobiDBLite consensus disorder prediction 184 199 - -
Lcy1g0738 408 MobiDBLite consensus disorder prediction 1 24 - -
Lcy1g0738 408 MobiDBLite consensus disorder prediction 184 207 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0738 K14503 - - csv:101216171 563.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2004 Lcy-Chr13:39013944 Lcy1g0738 Lcy-Chr1:6323803 1.68E-102 dispersed
Lcy1g0738 Lcy-Chr1:6323803 Lcy5g1802 Lcy-Chr5:40762427 2.19E-58 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lcy13g2004 . 1 312 BZR Transcription Factor Family AT1G75080 60.2 1.5e-87 320.5
Lcy1g0738 . 28 347 BZR Transcription Factor Family AT1G75080 54.0 1.0e-75 281.2
Lcy13g2004 . 1 312 BZR Transcription Factor Family AT1G19350 58.9 8.2e-86 314.7
Lcy1g0738 . 28 345 BZR Transcription Factor Family AT1G19350 54.3 3.6e-73 272.7
Lcy1g0738 . 6 347 BZR Transcription Factor Family AT3G50750 52.9 1.1e-72 270.8
Lcy13g2004 . 1 312 BZR Transcription Factor Family AT3G50750 50.8 5.2e-62 235.3
Lcy5g1802 . 108 357 BZR Transcription Factor Family AT4G18890 52.9 2.6e-50 196.1
Lcy6g0647 . 147 396 BZR Transcription Factor Family AT4G18890 52.8 3.4e-50 195.7
Lcy6g0647 . 1 396 BZR Transcription Factor Family AT1G78700 61.4 2.3e-109 392.9
Lcy5g1802 . 1 357 BZR Transcription Factor Family AT1G78700 63.2 9.7e-100 360.9
Lcy1g0738 . 28 228 BZR Transcription Factor Family AT4G36780 67.8 4.0e-59 225.7
Lcy13g2004 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 2.4e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19540 None None None None Lcy TF