Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g0754 | ATGGCGGGTCAACCGTCAGATTCTTCCCCTCTTATTCCTCCGGCTCCGATCAGCGACCCCAGTGAGATCGACCTCGAAGCCGGCCAAGGGGAGCAAATTCAGTGTAGAATCTGTCTCGAGACCGATGGTAGGGATTTTATTGCTCCTTGCAAATGCAAAGGGACATCGAAGTATGTTCATCGAGAATGTCTGGATCATTGGCGAGCTGTGAAGGAGCTTTATTATTTTTTGCTTTGCTCGGCTTATCTGGATGCTTCATCACTTGTTATGATCGGAGAGTTAGGAATGATTTGGCTCAACCATGTAGAGAATTGTGTCTATGTTGCTGCCACCCTGGACTGTCATTTACCTGGTACTCTTTGCATGTGGACTGACTGTACCACTTGCTTCGAAAGTTGTGGAAGCATAGCAACCGAATGTGGATGCCTAGGAGGTGCTGGTGAAGCAGGATTGCCATTATTATTTATAATGGCGTTGATCGTTCTTGGTTTGTTTACAGTGATTGGGATATTCTACAGTGTCTTGGTGGCCACCATGGTTGGACAACGAATATGGCAACGACACTATCACATACTTGCAAAAAGAATGTTAACAAAGTGCATCATGGGTGAAGGTGGATGCCCTTCAGCTGGCCAAGCACATTCATTCACGAGGTCTGTCTTATTGGAATATGTTGTGGAAGATGTAGATGGCGAGATGACAGGATCTGACTGGCTACCTCCACCACTTCCGGCAGAGCACGTTCAACAGCTGAAAACTCTTGGCCTTCTATGA | 774 | 46.64 | MAGQPSDSSPLIPPAPISDPSEIDLEAGQGEQIQCRICLETDGRDFIAPCKCKGTSKYVHRECLDHWRAVKELYYFLLCSAYLDASSLVMIGELGMIWLNHVENCVYVAATLDCHLPGTLCMWTDCTTCFESCGSIATECGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKCIMGEGGCPSAGQAHSFTRSVLLEYVVEDVDGEMTGSDWLPPPLPAEHVQQLKTLGLL | 257 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 6463853 | 6468672 | + | Maker00013165 | Lcy1g0754 | 622666 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g0754 | 257 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 13 | 81 | - | - | |
| Lcy1g0754 | 257 | SUPERFAMILY | RING/U-box | 31 | 79 | - | - | |
| Lcy1g0754 | 257 | CDD | RING_CH-C4HC3_MARCH | 35 | 79 | - | - | |
| Lcy1g0754 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 83 | IPR013083 | - | |
| Lcy1g0754 | 257 | Pfam | RING-variant domain | 35 | 69 | IPR011016 | GO:0008270(InterPro) | |
| Lcy1g0754 | 257 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 27 | 86 | IPR011016 | GO:0008270(InterPro) | |
| Lcy1g0754 | 257 | SMART | ringv_2 | 34 | 80 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0754 | Lcy-Chr1:6463853 | Lcy2g0769 | Lcy-Chr2:6834968 | 9.33E-12 | dispersed |
Pathway information