Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0776 ATGGCAGCAGCTATAGATTTTTACAGTGGAATTTCTACGCCGGTTTACTCTTCGGACCCTTTTAGCGAAGAATTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTATTTCAACCTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTACTCTATCATTTCCTCCTTCTCCTTCTGTTTCTTCTCAGCCTAATTTGAGCCCTGATTTTTGCTCCCCGTCGAGCACCCGGTTGTTTTCTCAAGGGTTCTCGGGAATTGAACAAATGGGTCTTGAGCAATCAGGTCCAATCGGGCTAAACAATCTCACCCCTTCCCAAATTCTCCAAATTCAAGCTCAAATCCAGCTACCCCCACAAACTATGTCTTCTTTCTCTGCTTCTTCTTCTTTCCAGTCGTCCCAATACCATAACTTCATCGCCCCCAAATCCATCTCAATGAAGCACATCGGCTCTCCACCTAAATCCACCAAACTGTACAGGGGAGTCCGGCAGCGTCACTGGGGAAAATGGGTGGCCGAAATCAGACTTCCAAAGAACAGAACCAGACTATGGCTTGGCACTTTCGACACGGCCGAGGAGGCTGCTTTAGCCTATGATAAAGCTGCTTACAAGCTCCGTGGCGACTTTGCCAGGCTCAATTTCCCACATCTCAAACACCAATTCGGAGACTTCAAACCTCTTCACCCTTCTGTGGACGCGAAGCTTCAAGCAATTTGTCAGAGCTTGAAACAGGGGAAAACAGAGAAGCTCTGTTCTGCTGAGGATGAAAAGCCAACGACCACTCCACCTCCATCCGAATCAAACTTAGTGGTTGACAGTTTTTGGGAACCAGCATTGAAAAGCGAATTGGAGACCTCATCTTCATCTTCATCCTCATCTCCTTCGCGGTCTGAAGATTTCTCCACCGGATCTTCCCCTGAGTCAAGTATTATTAGCTTCTTGGATTTCTCGGATTCGCAGTGGGGTGAAGGAGAAGCATTTTGTTTGGAAAAGTATCCATCTGTTGAAATTGATTGGGCAGCTCTGAATCAGCTGGCCGAATCAGAAGGTCTTGTGTTAGTGAAAGCTTTTAGGGGTCAGTCAATGAAAGAGTCTCTTTTAAGGGATATGCAGTTGTCTGTGATGGTTGTAATTCCATTGTGGTCTGCAGGTGACGCCAAAGACAAAATTGAGAGTCCCAAACAAAACCAGTGGGCTCTCGTCTCGACACCCGGTTTTATTATTAATCTGGGGAATGGGAATCCCCTGAAAGTTGAAACTTAA 1260 45.63 MAAAIDFYSGISTPVYSSDPFSEELMKALQPFMKSAISTSSSSSSSSSSTLSFPPSPSVSSQPNLSPDFCSPSSTRLFSQGFSGIEQMGLEQSGPIGLNNLTPSQILQIQAQIQLPPQTMSSFSASSSFQSSQYHNFIAPKSISMKHIGSPPKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQFGDFKPLHPSVDAKLQAICQSLKQGKTEKLCSAEDEKPTTTPPPSESNLVVDSFWEPALKSELETSSSSSSSSPSRSEDFSTGSSPESSIISFLDFSDSQWGEGEAFCLEKYPSVEIDWAALNQLAESEGLVLVKAFRGQSMKESLLRDMQLSVMVVIPLWSAGDAKDKIESPKQNQWALVSTPGFIINLGNGNPLKVET 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6603495 6605529 + Maker00013227 Lcy1g0776 622688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0776 419 Pfam AP2 domain 157 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0776 419 MobiDBLite consensus disorder prediction 38 66 - -
Lcy1g0776 419 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 341 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lcy1g0776 419 CDD AP2 156 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0776 419 MobiDBLite consensus disorder prediction 282 306 - -
Lcy1g0776 419 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677(InterPro)
Lcy1g0776 419 SMART rav1_2 157 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0776 419 FunFam Ethylene-responsive transcription factor 2 156 215 - -
Lcy1g0776 419 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0776 419 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0776 419 ProSiteProfiles AP2/ERF domain profile. 157 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0776 419 MobiDBLite consensus disorder prediction 249 268 - -
Lcy1g0776 419 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0776 Lcy-Chr1:6603495 Lcy9g1599 Lcy-Chr9:41162444 2.35E-71 dispersed
Lcy1g0776 Lcy-Chr1:6603495 Lcy13g1578 Lcy-Chr13:34614837 7.18E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19541 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0776 K09286 - csv:101211347 504.212