Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0797 ATGAATCCTCCCACTTTCCCCATGGAATTTTCCGGCGACCCAATTCCGACCACTTTCACCGGAAACGCCGACCCGCGGATTCCGTTGCAAAACCTCTCGACGATCCGTTCCCGAATGGACGCCGTCCAAATCTTCCTATCCGACAACATCGACAGAGAAACTCGCATCAGCAATCAGCAGATGGATGCGGTTTCGTCTGAAATCGCCTCTGCAATCCAACAGATCATCGTCAACGGCGCCGCTCTTCTAGCCTGCGCCCAAGTGAAATCCCCGAATACGCCGGATTTGACGGCCTCGACGACTCGAACTCATCCGAGTCCTGTGGCAGAGAAATCAATTGCGGAGCTGAAGGTAGAGGCTGCAGATGAGATTACGAGAGCCGAATCCGAGGAATTTGACCCGGATTGTGAAATCGTGGAGCTGGATGCGATGGAGTTGCTAGCGGAGCACATCCATTTCTGCGAAATCTGCGGGAAAGGGTTCAAGCGCGATGCGAATTTGCGGATGCATATGCGGGCCCATGGGAATCAATTCAAGACTCCAGAGGCGTTGGCGAAGCCGTTGGATGTCGTTGCTGCGGACCAAAGGGCGAAGCGCACGCGGTTTTCGTGCCCTTACGACGGCTGTGTAAGGAACAAAACGCACAAGAAGTTCAGGCCTCTGAAATCGTTGATTTGCGTCAAGAATCACTTCAAGCGGAGCCACTGCCCCAAGATGTTCTCCTGCAATCGGTGCAACAAGAAGAGCTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGCGAGTCGAAGTGGCGGTGTTCGTGTGGGACGACCTTTTCCCGCAAGGACAAGTTGTTTGGTCATATGGCGCTGTTCGAAGGCCACATGCCGGCGGTGGCGGACGACGACGATGGGAAGGGGAAAGTTACGGCGGCGACGCCGGAGATGGATGAAGATGGGGACTGTAATCGGATATCGAAGGACGTTAGTATCCCAAACGCTTCAAATGGATCGGATGATGGATCTTTCGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTTTGCAAGAGGTGCTGGGATTCCCGTATAATTTGGATTCGGAATCCGAATGGAAATTTTGTGGTTTTTGA 1131 52.79 MNPPTFPMEFSGDPIPTTFTGNADPRIPLQNLSTIRSRMDAVQIFLSDNIDRETRISNQQMDAVSSEIASAIQQIIVNGAALLACAQVKSPNTPDLTASTTRTHPSPVAEKSIAELKVEAADEITRAESEEFDPDCEIVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDVVAADQRAKRTRFSCPYDGCVRNKTHKKFRPLKSLICVKNHFKRSHCPKMFSCNRCNKKSFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMALFEGHMPAVADDDDGKGKVTAATPEMDEDGDCNRISKDVSIPNASNGSDDGSFESFLDGFGSIENHCLQEVLGFPYNLDSESEWKFCGF 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6781505 6782635 + Maker00013045 Lcy1g0797 622709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0797 376 Pfam Zinc finger, C2H2 type 152 174 IPR013087 -
Lcy1g0797 376 SUPERFAMILY beta-beta-alpha zinc fingers 149 175 IPR036236 -
Lcy1g0797 376 Gene3D Classic Zinc Finger 152 175 - -
Lcy1g0797 376 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 315 IPR044300 GO:0010044(InterPro)|GO:0010447(InterPro)
Lcy1g0797 376 FunFam Zinc finger 45-like 149 175 - -
Lcy1g0797 376 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Lcy1g0797 376 MobiDBLite consensus disorder prediction 300 320 - -
Lcy1g0797 376 Gene3D Classic Zinc Finger 237 297 - -
Lcy1g0797 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Lcy1g0797 376 SMART c2h2final6 240 262 IPR013087 -
Lcy1g0797 376 SMART c2h2final6 202 235 IPR013087 -
Lcy1g0797 376 SMART c2h2final6 152 174 IPR013087 -
Lcy1g0797 376 SMART c2h2final6 268 292 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0797 Lcy-Chr1:6781505 Lcy5g1012 Lcy-Chr5:19191599 8.33E-71 dispersed
Lcy1g0797 Lcy-Chr1:6781505 Lcy9g0767 Lcy-Chr9:26033257 4.12E-75 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19544 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0797 - - - 0.0