Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0824 ATGGCGGATAGTTTTTACTGTACAGAGAATGCCAATACTTGTTTTGATGAATTTGATTGTAATGCCACAAATAATGAGTTTGAGCGATGCTCAATCTCTCTGCCCCACCGAAGAATCCGAGACCCGAATGTCGACTGTTTCGGATCCGGGAATTTGATGGGCTCTGTGATTGAGAATGAAGAGAGGATTAAGGGAATGGTTGAGAAAGAGATTGAGCATTTGCCTAGACATGATTATCTTAAGAGAATGCGCTGTGGGGATTTGGATTTGAAGTTTAGGAGAGAGGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTTTGAGTCTTTGTCTATCTATGAACTACTTGGACCGTTTCCTCTCAGTATATCACATGCCTATGGATAAAAGCTGGACTGTGCAGCTGCTGTCAGTAGCTTGTGTGTCTCTAGCAGCAAAGATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCCAAATTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTCTGGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATCACTGTTGAGCAGCACGTACCGAGCCTATCCTTTTCAAAATCTGCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTGCAAGAACCAGACATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAGAGAGTGATGAATTGTGTTGAACTGATCAGAGATTTGTCATTGATTAATAATGTTTATGGAAATGCATTGGTTGGTAATGGTGGGGGCTCAGTTCCTCAGAGCCCTGTTGGAGTGTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTAACTGCAGGGTCATGTGGTAATTCTTCTTCTTCTTCTTCTCATGACAGTCCAGACAGTAAGAGGAGGAGACAAGACAGACCATCATCAAAACATGATTCAAGTCCATCCAGTCCTGTCAAATGA 1095 41.55 MADSFYCTENANTCFDEFDCNATNNEFERCSISLPHRRIRDPNVDCFGSGNLMGSVIENEERIKGMVEKEIEHLPRHDYLKRMRCGDLDLKFRREAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHMPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHVPSLSFSKSAQLILSTIKGIDFLEFKPSEIALAVAISISGELQEPDMNKAILSFPYMEKERVMNCVELIRDLSLINNVYGNALVGNGGGSVPQSPVGVLDAACLSYKTEELTAGSCGNSSSSSSHDSPDSKRRRQDRPSSKHDSSPSSPVK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7022381 7025378 - Maker00013042 Lcy1g0824 622736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0824 364 FunFam D2/4-type cyclin 76 188 - -
Lcy1g0824 364 MobiDBLite consensus disorder prediction 339 354 - -
Lcy1g0824 364 CDD CYCLIN_AtCycD-like_rpt1 93 190 - -
Lcy1g0824 364 PANTHER CYCLINS 66 285 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Lcy1g0824 364 FunFam D6-type cyclin 189 280 - -
Lcy1g0824 364 MobiDBLite consensus disorder prediction 325 364 - -
Lcy1g0824 364 ProSitePatterns Cyclins signature. 93 124 IPR048258 -
Lcy1g0824 364 Pfam Cyclin, N-terminal domain 64 192 IPR006671 -
Lcy1g0824 364 Pfam Cyclin, C-terminal domain 195 286 IPR004367 -
Lcy1g0824 364 CDD CYCLIN_AtCycD-like_rpt2 195 282 - -
Lcy1g0824 364 Gene3D - 65 281 - -
Lcy1g0824 364 SUPERFAMILY Cyclin-like 177 296 IPR036915 -
Lcy1g0824 364 SUPERFAMILY Cyclin-like 56 192 IPR036915 -
Lcy1g0824 364 Gene3D - 76 193 - -
Lcy1g0824 364 SMART Cyclin_C_2 195 340 IPR004367 -
Lcy1g0824 364 SMART cyclin_7 98 186 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2102 Lcy-Chr13:39997581 Lcy1g0824 Lcy-Chr1:7022381 1.77E-53 dispersed
Lcy1g0824 Lcy-Chr1:7022381 Lcy6g0505 Lcy-Chr6:4727139 2.16E-49 dispersed
Lcy6g0441 Lcy-Chr6:4117844 Lcy1g0824 Lcy-Chr1:7022381 4.82E-61 transposed
Lcy1g0824 Lcy-Chr1:7022381 Lcy13g1500 Lcy-Chr13:33656000 1.15E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0824 K18810 - csv:101209378 577.4