Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0837 ATGGATGAAGACGATGGGAAAAAAGTCTTCGCCGGAACTTTGAAAATCCGCTACAAACTTTCGAGAAAAGTTCGCCACGATTTGCGGAAGCCATTGGCAACTCGTTTGCAGAGACACAATCGAGGCTCAAGCCTCGTTGATAATCAATCAATGAACGGCAAAGCAGAGAAGGTCTACGTCGCTATCGGGAATGATCTTCACGATGGGTTCAAGACCTTGGGGTGGACTCTTAGGAAATGGAAGTCTCACCCAATTTCAATTGTGATTCTTCACGTCGCCTACACCATCGGCAAGCTTCCTGCGAGTTCTGTAAGTGAGGAGAAAGTGGAAGTTCTGAGGAGATATGAGCAGGAAAAGATTGACAAGCTACTTTCTAAATATGTAGATTTCTGTGGCAAGGTAAAAGCCGAAATTCTCAAGGTTGAGAAATCTGATGAACCTGTTAATAAGCTCCTTGTTGACCTGATTTCAGAATTGGGGATAACCAATTTGGTCATTGGCTTTACGTTTATGAAATCTTCATCTTGGAAATCGAAGAATGCAATTAGTGGATCATTCTACATTTACAGAAACAAGGCCCATTTTTGCGAGTTGTTTGTAATATGGGGAGGAAAACAGGTATTTCTCAGAGATGAAAGAATCATGGAAGATGATAAAGGTGTAAGGATTGCTAAAATCAGCTCGAAACCCTCATTAAAGGGTTGGCTTGGAAGGATTTTCGTAGAAGACCCGAACTATTACTCAGAAAGGAATTTGAGTCTCTCGTCTGCTTCACCAAGTAGTTCAAATTCCTCTAGTTCTCGAAATTATTGGGACAGTAATGTCCATGAACTTGAGAACTACTATGAGGAATTACTGTCATTGAATTTGCAGGAGGAAGAAGATTGTGAGCAGGATCAAGATGGTGGCCTTGAAAGTTCAGGTTCAACCCAGTTCAATGTTCTTGATCATCCGGATTCAAATATGAATGCTGAGGAAAGAATTGAGCATCTGAGGACTAAAATTGAGGACGCTCGCAAGACCGTCCAGTTGATGAAAGATGAAGCAAAGGGCAGTGCTGAAAGGCAAGCTAAAGCAGAGTGGGCCATTAACTTGTGTAGTCAGCGGACCGAAGAGCTTGAAGCTCAGATAAAAGAAGAGGTTACAGTCAGGGAAGAGTTGAAGAAAGAATTAGACTCTACCAAAGAATACATCCTGGAAATAGTAGGTGATATCGAGGAAAGCAAGATCAGATTAAGTTCACTTCTCGAACTCCAAGCTGAGCTATCAAGCAAGCTCCTAATTTCCACAGTAGGAAAATCACGTATAGAGGCTCAATTGGAGAAGACAGCGAAAACAAGAGAGGGGATGGTGAGAGAAATCGAGCAGCTGAGGAGACAGAGAGACATTCTTCACCGAAGAATTGAGTTCTGTAAAGAGAAAGATGCCATTGGAATGGCCGAAAGGTCAACTGAAGTGTCCTGTAGTACAAGAGTGTACACGGCGGAAGAGATCAGATTAGCAACTGATAGCTTTTCAGAACAAATGAGATTGAGTTCCCGAATGTATAGAGGACGTATCAACCATACCTCAGTTGCAATCCAAATGATCGACTCAGGAAATCGACTGTCAGAAGAAGATTTCCAATCTAAGGTAGAGCTTTTAAGCAATATCCGTCACCCTCATCTGATTGCCATCATGGGATTCTGCTCCGAGCTCAAATGCATTGTCTTCGATTACATGCATGGTGGTAGCTTAAGTGACAGACTACTTCCTTCCAACAAAAGATCCAGGAAAATATGCCGCTCTCTCATGTGGCATGATAGAATCCGTATAGCATCAGAGGTATGCTCAGGCTTGAGCTTCCTTCACCAGGCCCAACCTCAGCCCATTTCTCATGGCAGCCTCACCCTGTCCAAAATTCTCCTGGACCAAAACCTTGTTGCCAAAATCACTGGCTCTGGGCTCGTCGAATTGGATGAAGCTGGTGGTATTGAATTGGACATTCGGGCTTTTGGGGCTCTACTGCTACATCTTGTAACCGGGAGGAATTGGGAAGGGTTGATTGAAAAGGGGTTGACGATGGGTAAGGTGGGTCTGGTGCAGATTCTAGACGATAAGGCTGGAAAGTGGCCATTGGACTTGGTTGATGCGCTAGTTGATCTGGCTTTGAGATGTGTAACTCCAAATGGATCCAATTCAGAGGTTAACTTGCGGACAGCCATGGAAGAGATCGATGAGATCAAGAGGAGAGCAGATGATCTGGTGGAAAATGGAAAGCATGCGGGAGGGACTGAAGGTGCAGATGCAGCTAATGAGGACGTCGAAGATGTTCCAAGACTCTTCATCTGCCCCATATTGCAGGAAGTGATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCGTACGAGCTAGAGGCCATAGAACAATGGATAATTGCTGGACACGATACATCACCAATGACCAACTTGAGGTTGCAGCACCCTTATCTCACTCCTAATCACACTCTTCGCTCTCTAATTCAAGACTGGCAAAATGAGACCTCAAATGTTTACACATCTTAG 2544 44.1 MDEDDGKKVFAGTLKIRYKLSRKVRHDLRKPLATRLQRHNRGSSLVDNQSMNGKAEKVYVAIGNDLHDGFKTLGWTLRKWKSHPISIVILHVAYTIGKLPASSVSEEKVEVLRRYEQEKIDKLLSKYVDFCGKVKAEILKVEKSDEPVNKLLVDLISELGITNLVIGFTFMKSSSWKSKNAISGSFYIYRNKAHFCELFVIWGGKQVFLRDERIMEDDKGVRIAKISSKPSLKGWLGRIFVEDPNYYSERNLSLSSASPSSSNSSSSRNYWDSNVHELENYYEELLSLNLQEEEDCEQDQDGGLESSGSTQFNVLDHPDSNMNAEERIEHLRTKIEDARKTVQLMKDEAKGSAERQAKAEWAINLCSQRTEELEAQIKEEVTVREELKKELDSTKEYILEIVGDIEESKIRLSSLLELQAELSSKLLISTVGKSRIEAQLEKTAKTREGMVREIEQLRRQRDILHRRIEFCKEKDAIGMAERSTEVSCSTRVYTAEEIRLATDSFSEQMRLSSRMYRGRINHTSVAIQMIDSGNRLSEEDFQSKVELLSNIRHPHLIAIMGFCSELKCIVFDYMHGGSLSDRLLPSNKRSRKICRSLMWHDRIRIASEVCSGLSFLHQAQPQPISHGSLTLSKILLDQNLVAKITGSGLVELDEAGGIELDIRAFGALLLHLVTGRNWEGLIEKGLTMGKVGLVQILDDKAGKWPLDLVDALVDLALRCVTPNGSNSEVNLRTAMEEIDEIKRRADDLVENGKHAGGTEGADAANEDVEDVPRLFICPILQEVMKNPHVAADGFSYELEAIEQWIIAGHDTSPMTNLRLQHPYLTPNHTLRSLIQDWQNETSNVYTS 847
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 7153232 7157151 - Maker00012119 Lcy1g0837 622749
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0837 847 SUPERFAMILY Protein kinase-like (PK-like) 487 724 IPR011009 -
Lcy1g0837 847 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 845 IPR013083 -
Lcy1g0837 847 Gene3D Phosphorylase Kinase; domain 1 476 573 - -
Lcy1g0837 847 Coils Coil 731 751 - -
Lcy1g0837 847 Pfam U-box domain 771 842 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g0837 847 Pfam Protein tyrosine and serine/threonine kinase 518 651 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0837 847 Coils Coil 321 348 - -
Lcy1g0837 847 SMART Ubox_2 774 837 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g0837 847 MobiDBLite consensus disorder prediction 293 318 - -
Lcy1g0837 847 CDD RING-Ubox_WDSUB1-like 772 827 - -
Lcy1g0837 847 SUPERFAMILY RING/U-box 761 844 - -
Lcy1g0837 847 Coils Coil 370 390 - -
Lcy1g0837 847 Coils Coil 440 474 - -
Lcy1g0837 847 ProSiteProfiles U-box domain profile. 770 844 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g0837 847 ProSiteProfiles Protein kinase domain profile. 494 847 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0837 847 PANTHER OS02G0152300 PROTEIN 58 835 IPR051348 -
Lcy1g0837 847 Gene3D Transferase(Phosphotransferase) domain 1 586 754 - -
Lcy1g0837 847 MobiDBLite consensus disorder prediction 302 318 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0837 Lcy-Chr1:7153232 Lcy8g1810 Lcy-Chr8:44496558 8.44E-65 dispersed
Lcy1g0837 Lcy-Chr1:7153232 Lcy11g1973 Lcy-Chr11:43345551 1.41E-68 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65641 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0837 - - - 0.0