Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0837 | ATGGATGAAGACGATGGGAAAAAAGTCTTCGCCGGAACTTTGAAAATCCGCTACAAACTTTCGAGAAAAGTTCGCCACGATTTGCGGAAGCCATTGGCAACTCGTTTGCAGAGACACAATCGAGGCTCAAGCCTCGTTGATAATCAATCAATGAACGGCAAAGCAGAGAAGGTCTACGTCGCTATCGGGAATGATCTTCACGATGGGTTCAAGACCTTGGGGTGGACTCTTAGGAAATGGAAGTCTCACCCAATTTCAATTGTGATTCTTCACGTCGCCTACACCATCGGCAAGCTTCCTGCGAGTTCTGTAAGTGAGGAGAAAGTGGAAGTTCTGAGGAGATATGAGCAGGAAAAGATTGACAAGCTACTTTCTAAATATGTAGATTTCTGTGGCAAGGTAAAAGCCGAAATTCTCAAGGTTGAGAAATCTGATGAACCTGTTAATAAGCTCCTTGTTGACCTGATTTCAGAATTGGGGATAACCAATTTGGTCATTGGCTTTACGTTTATGAAATCTTCATCTTGGAAATCGAAGAATGCAATTAGTGGATCATTCTACATTTACAGAAACAAGGCCCATTTTTGCGAGTTGTTTGTAATATGGGGAGGAAAACAGGTATTTCTCAGAGATGAAAGAATCATGGAAGATGATAAAGGTGTAAGGATTGCTAAAATCAGCTCGAAACCCTCATTAAAGGGTTGGCTTGGAAGGATTTTCGTAGAAGACCCGAACTATTACTCAGAAAGGAATTTGAGTCTCTCGTCTGCTTCACCAAGTAGTTCAAATTCCTCTAGTTCTCGAAATTATTGGGACAGTAATGTCCATGAACTTGAGAACTACTATGAGGAATTACTGTCATTGAATTTGCAGGAGGAAGAAGATTGTGAGCAGGATCAAGATGGTGGCCTTGAAAGTTCAGGTTCAACCCAGTTCAATGTTCTTGATCATCCGGATTCAAATATGAATGCTGAGGAAAGAATTGAGCATCTGAGGACTAAAATTGAGGACGCTCGCAAGACCGTCCAGTTGATGAAAGATGAAGCAAAGGGCAGTGCTGAAAGGCAAGCTAAAGCAGAGTGGGCCATTAACTTGTGTAGTCAGCGGACCGAAGAGCTTGAAGCTCAGATAAAAGAAGAGGTTACAGTCAGGGAAGAGTTGAAGAAAGAATTAGACTCTACCAAAGAATACATCCTGGAAATAGTAGGTGATATCGAGGAAAGCAAGATCAGATTAAGTTCACTTCTCGAACTCCAAGCTGAGCTATCAAGCAAGCTCCTAATTTCCACAGTAGGAAAATCACGTATAGAGGCTCAATTGGAGAAGACAGCGAAAACAAGAGAGGGGATGGTGAGAGAAATCGAGCAGCTGAGGAGACAGAGAGACATTCTTCACCGAAGAATTGAGTTCTGTAAAGAGAAAGATGCCATTGGAATGGCCGAAAGGTCAACTGAAGTGTCCTGTAGTACAAGAGTGTACACGGCGGAAGAGATCAGATTAGCAACTGATAGCTTTTCAGAACAAATGAGATTGAGTTCCCGAATGTATAGAGGACGTATCAACCATACCTCAGTTGCAATCCAAATGATCGACTCAGGAAATCGACTGTCAGAAGAAGATTTCCAATCTAAGGTAGAGCTTTTAAGCAATATCCGTCACCCTCATCTGATTGCCATCATGGGATTCTGCTCCGAGCTCAAATGCATTGTCTTCGATTACATGCATGGTGGTAGCTTAAGTGACAGACTACTTCCTTCCAACAAAAGATCCAGGAAAATATGCCGCTCTCTCATGTGGCATGATAGAATCCGTATAGCATCAGAGGTATGCTCAGGCTTGAGCTTCCTTCACCAGGCCCAACCTCAGCCCATTTCTCATGGCAGCCTCACCCTGTCCAAAATTCTCCTGGACCAAAACCTTGTTGCCAAAATCACTGGCTCTGGGCTCGTCGAATTGGATGAAGCTGGTGGTATTGAATTGGACATTCGGGCTTTTGGGGCTCTACTGCTACATCTTGTAACCGGGAGGAATTGGGAAGGGTTGATTGAAAAGGGGTTGACGATGGGTAAGGTGGGTCTGGTGCAGATTCTAGACGATAAGGCTGGAAAGTGGCCATTGGACTTGGTTGATGCGCTAGTTGATCTGGCTTTGAGATGTGTAACTCCAAATGGATCCAATTCAGAGGTTAACTTGCGGACAGCCATGGAAGAGATCGATGAGATCAAGAGGAGAGCAGATGATCTGGTGGAAAATGGAAAGCATGCGGGAGGGACTGAAGGTGCAGATGCAGCTAATGAGGACGTCGAAGATGTTCCAAGACTCTTCATCTGCCCCATATTGCAGGAAGTGATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCGTACGAGCTAGAGGCCATAGAACAATGGATAATTGCTGGACACGATACATCACCAATGACCAACTTGAGGTTGCAGCACCCTTATCTCACTCCTAATCACACTCTTCGCTCTCTAATTCAAGACTGGCAAAATGAGACCTCAAATGTTTACACATCTTAG | 2544 | 44.1 | MDEDDGKKVFAGTLKIRYKLSRKVRHDLRKPLATRLQRHNRGSSLVDNQSMNGKAEKVYVAIGNDLHDGFKTLGWTLRKWKSHPISIVILHVAYTIGKLPASSVSEEKVEVLRRYEQEKIDKLLSKYVDFCGKVKAEILKVEKSDEPVNKLLVDLISELGITNLVIGFTFMKSSSWKSKNAISGSFYIYRNKAHFCELFVIWGGKQVFLRDERIMEDDKGVRIAKISSKPSLKGWLGRIFVEDPNYYSERNLSLSSASPSSSNSSSSRNYWDSNVHELENYYEELLSLNLQEEEDCEQDQDGGLESSGSTQFNVLDHPDSNMNAEERIEHLRTKIEDARKTVQLMKDEAKGSAERQAKAEWAINLCSQRTEELEAQIKEEVTVREELKKELDSTKEYILEIVGDIEESKIRLSSLLELQAELSSKLLISTVGKSRIEAQLEKTAKTREGMVREIEQLRRQRDILHRRIEFCKEKDAIGMAERSTEVSCSTRVYTAEEIRLATDSFSEQMRLSSRMYRGRINHTSVAIQMIDSGNRLSEEDFQSKVELLSNIRHPHLIAIMGFCSELKCIVFDYMHGGSLSDRLLPSNKRSRKICRSLMWHDRIRIASEVCSGLSFLHQAQPQPISHGSLTLSKILLDQNLVAKITGSGLVELDEAGGIELDIRAFGALLLHLVTGRNWEGLIEKGLTMGKVGLVQILDDKAGKWPLDLVDALVDLALRCVTPNGSNSEVNLRTAMEEIDEIKRRADDLVENGKHAGGTEGADAANEDVEDVPRLFICPILQEVMKNPHVAADGFSYELEAIEQWIIAGHDTSPMTNLRLQHPYLTPNHTLRSLIQDWQNETSNVYTS | 847 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7153232 | 7157151 | - | Maker00012119 | Lcy1g0837 | 622749 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0837 | 847 | SUPERFAMILY | Protein kinase-like (PK-like) | 487 | 724 | IPR011009 | - | |
Lcy1g0837 | 847 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 769 | 845 | IPR013083 | - | |
Lcy1g0837 | 847 | Gene3D | Phosphorylase Kinase; domain 1 | 476 | 573 | - | - | |
Lcy1g0837 | 847 | Coils | Coil | 731 | 751 | - | - | |
Lcy1g0837 | 847 | Pfam | U-box domain | 771 | 842 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy1g0837 | 847 | Pfam | Protein tyrosine and serine/threonine kinase | 518 | 651 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g0837 | 847 | Coils | Coil | 321 | 348 | - | - | |
Lcy1g0837 | 847 | SMART | Ubox_2 | 774 | 837 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy1g0837 | 847 | MobiDBLite | consensus disorder prediction | 293 | 318 | - | - | |
Lcy1g0837 | 847 | CDD | RING-Ubox_WDSUB1-like | 772 | 827 | - | - | |
Lcy1g0837 | 847 | SUPERFAMILY | RING/U-box | 761 | 844 | - | - | |
Lcy1g0837 | 847 | Coils | Coil | 370 | 390 | - | - | |
Lcy1g0837 | 847 | Coils | Coil | 440 | 474 | - | - | |
Lcy1g0837 | 847 | ProSiteProfiles | U-box domain profile. | 770 | 844 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Lcy1g0837 | 847 | ProSiteProfiles | Protein kinase domain profile. | 494 | 847 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g0837 | 847 | PANTHER | OS02G0152300 PROTEIN | 58 | 835 | IPR051348 | - | |
Lcy1g0837 | 847 | Gene3D | Transferase(Phosphotransferase) domain 1 | 586 | 754 | - | - | |
Lcy1g0837 | 847 | MobiDBLite | consensus disorder prediction | 302 | 318 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0837 | Lcy-Chr1:7153232 | Lcy8g1810 | Lcy-Chr8:44496558 | 8.44E-65 | dispersed | |
Lcy1g0837 | Lcy-Chr1:7153232 | Lcy11g1973 | Lcy-Chr11:43345551 | 1.41E-68 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65641 | None | None | None | None | Lcy | PK |
Pathway information
