Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0843 | ATGTTATCTTTGATCTCATCTTGCAATCAAGAAAACTTTCTGAGGCGGTTGTACAGTAACCATCAGAGTAGACGAGAAAAAAATTTCAAGTCATGGAGACCTAATATTTCACTTCCTGCAAATAGTAGTCACACTGTCATTGGGGATTCAGTCAAGCAAAAGTATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGTGCAACTGTCCAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCTTTAACAGCCTATGAGGAGTTTAAGGCTGCAGTTAATGCAGCCAAACAAGCTTTTCCCTCATGGAAAAAAACACCAATTTCTACTCGTCAACATATTATGTTCAAATTCCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTGACGATTATTATCACAGAACAGGGCAAAACATTAAAGGATGCTCAAGATGATATCCTCTATGGTTTAGAGGTGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAATTCATCCCTAATGCATCTGATGGAATTGATTCCTACTGCATCCGAGAACCAATAGGTGTTTGTGCTGGGATATGCTCTTTTAACCATCCAGCAACAATTTCCTTATGGATGTTTCCGATTGCAGTTATATGTGGCAATACATTTGTTCTTAAGCCATGTGAAAAGTACCCGGGGGCTTCCATGTTGTTGGCTGCATTAGCAGTGGAGGCTGGTTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCATCAACTATATATGCGACGATGAGGACATAAAAGCCATATCTTTTGCCAGTTCAAGTTCAACTGGAAAGAACATATATGCTAAGGCAGCTGCTACTGGAAAGCAAGTTCAGTCCAACTTAGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAATGCCCTGGTTGATGCTGGATTTGGTACTGCTGGACAGACAAGTATGGCTATCAACATTGTTGTCTCCGTTGGGAGTTCAATTCTATGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGGACAGATCCCAATGCTGACCTTGGTCCTGTAATTACCAAAGAGGTGAAAGATCGTTTTTGTACATTAGTTCAAAGTGGCATTGAAGGTGGCGCTAGACTTCTGCTTGACGGTAGAGATATTGTCCCAGGATACGAAAATGGAAATTTTGTTGGTCCTACCATTTTAGCTGATATAACAACCGACATGGAGTGCTACAAGGAGGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGGCTGACAACCTAGAGGAGGCTATATCCATTATAAACAGAAACAAGAACCGAAATGGAGCTTCCATATTCACAAATTCTGGCATTTATGCGAGGAAGTTCCAGAGTGAAGTGGAAGTGGGAATGGTTGGTATAAATGTTGCTGTTCCAGTTCCGTTGCCATCTTCCTTTAATGGTTTGAAGCCATCTTCTGCTGTTAATCTAGCTTTTTTTCAGTTCAATTTCTCAACCTCTTTGATGCCTCCTATCTATAAGTCGGGCCTGGAATTTTACACCCAATTGAAAAGAGTGGCTCAACAGTGGAAGAACTTACCAAATATTGGAGTCTCAATGGCGGTGCCTTCACCATCTGACAGACATTTGAAAGCTCGTGCAGTACCTTCAATGTTGCTTTCAACATCTGAGAAAGATTCACCTGGTGGGCGGCACAGAAGTTTACCGCCGTTGCCTTCCACATCCGAGAGGGATTCACCCAGCGATGCTGTACTTCTGCAAAACCCTCGAATATCTCAGACAGATTTAGCCAATGAAAGAGCCACCTCCTCTCCGCCAACTCCTGATAGGGATTTGCACGGTCAGGGACTCTCCCTGATCTCTACTTTGTCATCAGAGGGGGACGTATCCAACCATGATTTGTCTCCTGCTATGCCTTCGGCAGGTGATAGAGATTTACCTGGCCAAGCTATGTCAGTGTCAACATCCCGATCATCTGAGAGACTTTACATACCTCAGAAATCTCATTGGAATGAAGCCCAGCGGGCTGATTCAATTCCATCCACTTCTGAGAGGATCCATGTGCCCTCATCACAGACAAACAACATCAAAGCGCAGGCATCTCGAACAGCTCATCCTGCTTTGGTCTTAGCTGCCGAGGGGTTCTATGTACCTACATCTCATGACAGTATTTGTCTGATAACCCATGGAAATGACAGTTTAGTTCCATCTCAAAGAATCGACAGCATATGTCAATCATCAGAACGGGTATACATGCTAGCAACTTCCCATCTGAACGACAGTATGAGTCAAACATTGCGGAGTACCTCCCTGTTTTCTTCTTCAGAGAGGCATTATGTGCCTCCCACTTCTCATAGAAATGACCACATAAGCTTGGCGTCTCATACCGACGTTGCTTTGCAATCAACTTCAGATAGAATGTACTTGTCTAGCTTGTCCGAGAGGGGCAATAATATGGCTTCCGCTGCTTCTCAACAAGCTGAATCTTTATCATCCACTTCAGAGAGAATGTATATACCTCCATTAGTTCATAGAAGTGCAGGCATGCCACCGAAATCGGAATGGTTATGCATTCCCACTCCTGCCGTATCTCAGAGAATGTATCCACAAGGTTCAATAGTTTCAGCAGATGAATTTCAAAGCCAAGAGGCATCATTAACATTGCCTGCATCGCAAAGAATATGA | 2751 | 43.04 | MLSLISSCNQENFLRRLYSNHQSRREKNFKSWRPNISLPANSSHTVIGDSVKQKYQLKVPNLIGGEFLDSCNCPVVDVINPATQEVVSQVPLTAYEEFKAAVNAAKQAFPSWKKTPISTRQHIMFKFQELILRDMDKLVTIIITEQGKTLKDAQDDILYGLEVVKHACGLATMQMGEFIPNASDGIDSYCIREPIGVCAGICSFNHPATISLWMFPIAVICGNTFVLKPCEKYPGASMLLAALAVEAGLPDGVLNIVHGTHDIINYICDDEDIKAISFASSSSTGKNIYAKAAATGKQVQSNLGGKSHAIIMPDANMEATLNALVDAGFGTAGQTSMAINIVVSVGSSILWEEKLVECAKALKVNVGTDPNADLGPVITKEVKDRFCTLVQSGIEGGARLLLDGRDIVPGYENGNFVGPTILADITTDMECYKEEFFGPVLLCMQADNLEEAISIINRNKNRNGASIFTNSGIYARKFQSEVEVGMVGINVAVPVPLPSSFNGLKPSSAVNLAFFQFNFSTSLMPPIYKSGLEFYTQLKRVAQQWKNLPNIGVSMAVPSPSDRHLKARAVPSMLLSTSEKDSPGGRHRSLPPLPSTSERDSPSDAVLLQNPRISQTDLANERATSSPPTPDRDLHGQGLSLISTLSSEGDVSNHDLSPAMPSAGDRDLPGQAMSVSTSRSSERLYIPQKSHWNEAQRADSIPSTSERIHVPSSQTNNIKAQASRTAHPALVLAAEGFYVPTSHDSICLITHGNDSLVPSQRIDSICQSSERVYMLATSHLNDSMSQTLRSTSLFSSSERHYVPPTSHRNDHISLASHTDVALQSTSDRMYLSSLSERGNNMASAASQQAESLSSTSERMYIPPLVHRSAGMPPKSEWLCIPTPAVSQRMYPQGSIVSADEFQSQEASLTLPASQRI | 916 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7198187 | 7211058 | - | Maker00012290 | Lcy1g0843 | 622755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0843 | 916 | SUPERFAMILY | ALDH-like | 52 | 547 | IPR016161 | GO:0016491(InterPro) | |
Lcy1g0843 | 916 | Pfam | Aldehyde dehydrogenase family | 75 | 508 | IPR015590 | GO:0016491(InterPro) | |
Lcy1g0843 | 916 | NCBIfam | CoA-acylating methylmalonate-semialdehyde dehydrogenase | 61 | 545 | IPR010061 | GO:0004491(InterPro) | |
Lcy1g0843 | 916 | CDD | ALDH_F6_MMSDH | 59 | 545 | IPR010061 | GO:0004491(InterPro) | |
Lcy1g0843 | 916 | MobiDBLite | consensus disorder prediction | 639 | 653 | - | - | |
Lcy1g0843 | 916 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 2 | 304 | 502 | IPR016163 | GO:0016620(InterPro) | |
Lcy1g0843 | 916 | MobiDBLite | consensus disorder prediction | 575 | 721 | - | - | |
Lcy1g0843 | 916 | MobiDBLite | consensus disorder prediction | 594 | 631 | - | - | |
Lcy1g0843 | 916 | FunFam | Methylmalonate-semialdehyde dehydrogenase [acylating] | 63 | 310 | - | - | |
Lcy1g0843 | 916 | PANTHER | MALONATE-SEMIALDEHYDE DEHYDROGENASE | 24 | 558 | IPR010061 | GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER) | |
Lcy1g0843 | 916 | Gene3D | Aldehyde Dehydrogenase; Chain A, domain 1 | 78 | 507 | IPR016162 | GO:0016491(InterPro) | |
Lcy1g0843 | 916 | FunFam | Methylmalonate-semialdehyde dehydrogenase (Acylating) | 304 | 502 | - | - | |
Lcy1g0843 | 916 | MobiDBLite | consensus disorder prediction | 671 | 721 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g1208 | Lcy-Chr13:28743166 | Lcy1g0843 | Lcy-Chr1:7198187 | 2.08E-47 | dispersed | |
Lcy1g0843 | Lcy-Chr1:7198187 | Lcy2g0624 | Lcy-Chr2:5328987 | 2.88E-44 | dispersed | |
Lcy1g0843 | Lcy-Chr1:7198187 | Lcy4g0106 | Lcy-Chr4:1465533 | 2.14E-104 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g0843 | K00140 | - | csv:101207178 | 1403.65 |