Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0843 ATGTTATCTTTGATCTCATCTTGCAATCAAGAAAACTTTCTGAGGCGGTTGTACAGTAACCATCAGAGTAGACGAGAAAAAAATTTCAAGTCATGGAGACCTAATATTTCACTTCCTGCAAATAGTAGTCACACTGTCATTGGGGATTCAGTCAAGCAAAAGTATCAGCTGAAGGTTCCTAATTTAATTGGAGGGGAATTTTTGGATTCGTGCAACTGTCCAGTGGTTGATGTTATTAATCCAGCAACACAAGAAGTTGTTTCTCAAGTTCCTTTAACAGCCTATGAGGAGTTTAAGGCTGCAGTTAATGCAGCCAAACAAGCTTTTCCCTCATGGAAAAAAACACCAATTTCTACTCGTCAACATATTATGTTCAAATTCCAGGAGCTCATCCTCAGGGACATGGATAAGCTTGTGACGATTATTATCACAGAACAGGGCAAAACATTAAAGGATGCTCAAGATGATATCCTCTATGGTTTAGAGGTGGTTAAACATGCTTGTGGATTGGCCACTATGCAAATGGGGGAATTCATCCCTAATGCATCTGATGGAATTGATTCCTACTGCATCCGAGAACCAATAGGTGTTTGTGCTGGGATATGCTCTTTTAACCATCCAGCAACAATTTCCTTATGGATGTTTCCGATTGCAGTTATATGTGGCAATACATTTGTTCTTAAGCCATGTGAAAAGTACCCGGGGGCTTCCATGTTGTTGGCTGCATTAGCAGTGGAGGCTGGTTTGCCTGATGGTGTTCTAAATATTGTTCATGGAACCCATGATATCATCAACTATATATGCGACGATGAGGACATAAAAGCCATATCTTTTGCCAGTTCAAGTTCAACTGGAAAGAACATATATGCTAAGGCAGCTGCTACTGGAAAGCAAGTTCAGTCCAACTTAGGAGGCAAGAGTCATGCAATTATTATGCCTGATGCTAACATGGAGGCTACTTTAAATGCCCTGGTTGATGCTGGATTTGGTACTGCTGGACAGACAAGTATGGCTATCAACATTGTTGTCTCCGTTGGGAGTTCAATTCTATGGGAAGAAAAACTTGTGGAATGTGCCAAAGCACTTAAAGTGAATGTGGGGACAGATCCCAATGCTGACCTTGGTCCTGTAATTACCAAAGAGGTGAAAGATCGTTTTTGTACATTAGTTCAAAGTGGCATTGAAGGTGGCGCTAGACTTCTGCTTGACGGTAGAGATATTGTCCCAGGATACGAAAATGGAAATTTTGTTGGTCCTACCATTTTAGCTGATATAACAACCGACATGGAGTGCTACAAGGAGGAATTTTTTGGACCAGTTCTCCTTTGTATGCAGGCTGACAACCTAGAGGAGGCTATATCCATTATAAACAGAAACAAGAACCGAAATGGAGCTTCCATATTCACAAATTCTGGCATTTATGCGAGGAAGTTCCAGAGTGAAGTGGAAGTGGGAATGGTTGGTATAAATGTTGCTGTTCCAGTTCCGTTGCCATCTTCCTTTAATGGTTTGAAGCCATCTTCTGCTGTTAATCTAGCTTTTTTTCAGTTCAATTTCTCAACCTCTTTGATGCCTCCTATCTATAAGTCGGGCCTGGAATTTTACACCCAATTGAAAAGAGTGGCTCAACAGTGGAAGAACTTACCAAATATTGGAGTCTCAATGGCGGTGCCTTCACCATCTGACAGACATTTGAAAGCTCGTGCAGTACCTTCAATGTTGCTTTCAACATCTGAGAAAGATTCACCTGGTGGGCGGCACAGAAGTTTACCGCCGTTGCCTTCCACATCCGAGAGGGATTCACCCAGCGATGCTGTACTTCTGCAAAACCCTCGAATATCTCAGACAGATTTAGCCAATGAAAGAGCCACCTCCTCTCCGCCAACTCCTGATAGGGATTTGCACGGTCAGGGACTCTCCCTGATCTCTACTTTGTCATCAGAGGGGGACGTATCCAACCATGATTTGTCTCCTGCTATGCCTTCGGCAGGTGATAGAGATTTACCTGGCCAAGCTATGTCAGTGTCAACATCCCGATCATCTGAGAGACTTTACATACCTCAGAAATCTCATTGGAATGAAGCCCAGCGGGCTGATTCAATTCCATCCACTTCTGAGAGGATCCATGTGCCCTCATCACAGACAAACAACATCAAAGCGCAGGCATCTCGAACAGCTCATCCTGCTTTGGTCTTAGCTGCCGAGGGGTTCTATGTACCTACATCTCATGACAGTATTTGTCTGATAACCCATGGAAATGACAGTTTAGTTCCATCTCAAAGAATCGACAGCATATGTCAATCATCAGAACGGGTATACATGCTAGCAACTTCCCATCTGAACGACAGTATGAGTCAAACATTGCGGAGTACCTCCCTGTTTTCTTCTTCAGAGAGGCATTATGTGCCTCCCACTTCTCATAGAAATGACCACATAAGCTTGGCGTCTCATACCGACGTTGCTTTGCAATCAACTTCAGATAGAATGTACTTGTCTAGCTTGTCCGAGAGGGGCAATAATATGGCTTCCGCTGCTTCTCAACAAGCTGAATCTTTATCATCCACTTCAGAGAGAATGTATATACCTCCATTAGTTCATAGAAGTGCAGGCATGCCACCGAAATCGGAATGGTTATGCATTCCCACTCCTGCCGTATCTCAGAGAATGTATCCACAAGGTTCAATAGTTTCAGCAGATGAATTTCAAAGCCAAGAGGCATCATTAACATTGCCTGCATCGCAAAGAATATGA 2751 43.04 MLSLISSCNQENFLRRLYSNHQSRREKNFKSWRPNISLPANSSHTVIGDSVKQKYQLKVPNLIGGEFLDSCNCPVVDVINPATQEVVSQVPLTAYEEFKAAVNAAKQAFPSWKKTPISTRQHIMFKFQELILRDMDKLVTIIITEQGKTLKDAQDDILYGLEVVKHACGLATMQMGEFIPNASDGIDSYCIREPIGVCAGICSFNHPATISLWMFPIAVICGNTFVLKPCEKYPGASMLLAALAVEAGLPDGVLNIVHGTHDIINYICDDEDIKAISFASSSSTGKNIYAKAAATGKQVQSNLGGKSHAIIMPDANMEATLNALVDAGFGTAGQTSMAINIVVSVGSSILWEEKLVECAKALKVNVGTDPNADLGPVITKEVKDRFCTLVQSGIEGGARLLLDGRDIVPGYENGNFVGPTILADITTDMECYKEEFFGPVLLCMQADNLEEAISIINRNKNRNGASIFTNSGIYARKFQSEVEVGMVGINVAVPVPLPSSFNGLKPSSAVNLAFFQFNFSTSLMPPIYKSGLEFYTQLKRVAQQWKNLPNIGVSMAVPSPSDRHLKARAVPSMLLSTSEKDSPGGRHRSLPPLPSTSERDSPSDAVLLQNPRISQTDLANERATSSPPTPDRDLHGQGLSLISTLSSEGDVSNHDLSPAMPSAGDRDLPGQAMSVSTSRSSERLYIPQKSHWNEAQRADSIPSTSERIHVPSSQTNNIKAQASRTAHPALVLAAEGFYVPTSHDSICLITHGNDSLVPSQRIDSICQSSERVYMLATSHLNDSMSQTLRSTSLFSSSERHYVPPTSHRNDHISLASHTDVALQSTSDRMYLSSLSERGNNMASAASQQAESLSSTSERMYIPPLVHRSAGMPPKSEWLCIPTPAVSQRMYPQGSIVSADEFQSQEASLTLPASQRI 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7198187 7211058 - Maker00012290 Lcy1g0843 622755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0843 916 SUPERFAMILY ALDH-like 52 547 IPR016161 GO:0016491(InterPro)
Lcy1g0843 916 Pfam Aldehyde dehydrogenase family 75 508 IPR015590 GO:0016491(InterPro)
Lcy1g0843 916 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 61 545 IPR010061 GO:0004491(InterPro)
Lcy1g0843 916 CDD ALDH_F6_MMSDH 59 545 IPR010061 GO:0004491(InterPro)
Lcy1g0843 916 MobiDBLite consensus disorder prediction 639 653 - -
Lcy1g0843 916 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 304 502 IPR016163 GO:0016620(InterPro)
Lcy1g0843 916 MobiDBLite consensus disorder prediction 575 721 - -
Lcy1g0843 916 MobiDBLite consensus disorder prediction 594 631 - -
Lcy1g0843 916 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 63 310 - -
Lcy1g0843 916 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 24 558 IPR010061 GO:0004491(PANTHER)|GO:0004491(InterPro)|GO:0005739(PANTHER)|GO:0006210(PANTHER)|GO:0006574(PANTHER)|GO:0018478(PANTHER)
Lcy1g0843 916 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 78 507 IPR016162 GO:0016491(InterPro)
Lcy1g0843 916 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 304 502 - -
Lcy1g0843 916 MobiDBLite consensus disorder prediction 671 721 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1208 Lcy-Chr13:28743166 Lcy1g0843 Lcy-Chr1:7198187 2.08E-47 dispersed
Lcy1g0843 Lcy-Chr1:7198187 Lcy2g0624 Lcy-Chr2:5328987 2.88E-44 dispersed
Lcy1g0843 Lcy-Chr1:7198187 Lcy4g0106 Lcy-Chr4:1465533 2.14E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0843 K00140 - csv:101207178 1403.65