Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0847 ATGGGCAAATCACTCGACCAAGACCACTCCAAGAAGGCCTTCGGATGGGCTGCCACAGATTCCTCCGGCGTTCTTTCTCCCTTCCATTTCTCCAGAAGAGAAACAGAGGAAAAGGATGTGGCTTTCAAAGTTCTTTACTGTGGGATTTGTCATTCTGATCTTCACATGGTGAAGAATGAATGGGGCAATACCATTTACCCTATTGTTCCTGGACATGAAATCGCGGGTGAAGTAACGGAGGTTGGAAGCAAAGTGGAGAAATTCAAGGTCGGGGATAGAGTTGGCGTAGGATGTATAGTTGGATCCTGCCGCTCCTGTGATGAATGTTCCAACCACCTTGAGAACTATTGCCCCAAATTGATTCTCACATACTCTTCCAGACTCTCCGATGGGACCGTGACCTACGGCGGCTACTCCGACTGTATGGTCGTCGACGAGCATTTCATCGTTCGCATTCCCGATGGAATGCCTCTGCACGCTGGGGCTCCACTTCTCTGTGCTGGTATCACGGTGTACAGCCCCTTGAAATACTTCGGACTTGACAAGCCTGGTATGCACATTGGCGTGGTTGGCCTCGGCGGGCTTGGCCATGTCGCTGTCAAATTTGCCAAGGCCTTTGGCACCAAGGTTACTGTGATTAGTACCTCTCCTAACAAGAAGAAGGAGGCTATTGAAAATCTTGGGGTTGATTCATTCTTGGTCAGTCATGATCAAGAGGCAATGCAGGCTGCTAGTGGGACGTTTGATGGTATCATTGACACAGTATCTGCTGAACATCCCCTTCTTCCTCTACTGTCACTTATCAAAACACATGGAAAGTTTGTTATGGTTGGTGTACCAGATAAGCCACTCGAGCTGCCGACCTTTTCGCTTATTGGAGGGAGGAAAACAATGGCTGGTAGTTGTATTGGAGGGATGAAGGAAACGCAGGAGATGATTGATTTTGCAGCCAAACACAATATAACTGCGGATGTCGAGGTGATTCCGATCACCGACGTCAACACCGCTATGGAACGGTTGCTCAAACAAGATGTCAAGTATCGATTCGTCATCGACATTGCCAAGACATTGAAAGCCTAG 1080 48.33 MGKSLDQDHSKKAFGWAATDSSGVLSPFHFSRRETEEKDVAFKVLYCGICHSDLHMVKNEWGNTIYPIVPGHEIAGEVTEVGSKVEKFKVGDRVGVGCIVGSCRSCDECSNHLENYCPKLILTYSSRLSDGTVTYGGYSDCMVVDEHFIVRIPDGMPLHAGAPLLCAGITVYSPLKYFGLDKPGMHIGVVGLGGLGHVAVKFAKAFGTKVTVISTSPNKKKEAIENLGVDSFLVSHDQEAMQAASGTFDGIIDTVSAEHPLLPLLSLIKTHGKFVMVGVPDKPLELPTFSLIGGRKTMAGSCIGGMKETQEMIDFAAKHNITADVEVIPITDVNTAMERLLKQDVKYRFVIDIAKTLKA 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7242689 7246440 + Maker00012395 Lcy1g0847 622759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0847 359 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Lcy1g0847 359 Gene3D - 167 323 - -
Lcy1g0847 359 SUPERFAMILY GroES-like 19 184 IPR011032 -
Lcy1g0847 359 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491(InterPro)
Lcy1g0847 359 Pfam Alcohol dehydrogenase GroES-like domain 37 154 IPR013154 -
Lcy1g0847 359 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Lcy1g0847 359 Gene3D - 16 353 - -
Lcy1g0847 359 FunFam Cinnamyl alcohol dehydrogenase 167 323 - -
Lcy1g0847 359 FunFam Uncharacterized protein 16 166 - -
Lcy1g0847 359 CDD CAD1 14 352 IPR047109 GO:0016616(InterPro)
Lcy1g0847 359 PANTHER ALDEHYDE REDUCTASE 7 355 IPR047109 GO:0009809(PANTHER)|GO:0016616(PANTHER)|GO:0016616(InterPro)|GO:0045551(PANTHER)
Lcy1g0847 359 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0847 Lcy-Chr1:7242689 Lcy8g0233 Lcy-Chr8:6209097 2.32E-179 dispersed
Lcy1g0846 Lcy-Chr1:7236350 Lcy1g0847 Lcy-Chr1:7242689 1.10E-249 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0847 K23232 - csv:101222715 635.95