Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0848 AATATTGCTAATTATTTATCGTTTCAGGTGGTAATCGACAATGGCATAGTTCGAGTAACTTTTTCTAGTCCAGAAGGCAATGTTATTGGAATAAAATACAATGATCTTGATAACGTACTTGAAATTCACAATGCACATTATAACAGAGGATATTGGGACGTGGTTTGGAACCGCCCAAATAAACCTAGTGCCACCGACAGAGTAAGGGCAACCGATTTCAAGGTGATTACGGCCACTAGTGACCAAGTAGAGCTTTCATTTACCAAATATTGGGATCCTTCAGACTCTTCGTCGCTCCCTTTGAACATAGATAAGAGGTATATTCTGCGGCGAGGCGATTCCGGATTCTATGCATATAGCATATTTGAACGGTTGGATGGATGGCCTCAGATTGACGTGGATCAGATCAGAATCGTCTACAAAGTCCAAAGAGACAAATTTCATTACATGGCGGTATCGGATGACAGACAGAGGATCATGCCAACTCTACAGGACCGAATGACCGGGCAGCCTCTCGCTTTTAAGGAGGCGGTTCTCTTAACCCAACCCATGAATTCAAACCTGAGAGGAGAGGTGGACGATAAGTACCAGTACTCGATAGAGAACATGGATAATAAGGTTCATGGATGGGTGTCCAGGGACCCACAGGTGGGGTTCTGGATGATCACACCCAGTTACGAGTTTCGTACGGCTGGGCCCCTCAAGCAAGAACTCACTTCCCATGTCGGCCCCACTACCCTTTCCATGTTCGTGAGTACGCATTACGCGGGTAAAGAAGTATCGATGAGATTTGGAGAGGGAGAAGCATGGAAGAAGGTTTTCGGACCAGTCTTCATTTATCTCAACTCGGATCCGACCGGCACTCAAACTCCCGGTTCACTCTGGGAAGATGCTAAAAACCAGATGTTGGTAGAAACGAGCAAGTGGCCATACAGCTTTGTGGAGTACGAAGATTTTCCATCCTCAGACGAAAGAGGCAGCGTGGCTGGTCGATTAATAGTCCGTGATAGATACGCTGAGAAATGGTTGACGTGGGCCGACTCTGCGTTTGTGGGCCTTGCACCTCCCGGTGAATTGGGGTCCTGGCAAAGAGAAAGCAAGGGATATCAATTCTGGACACGAGCGGACCAGCAAGGACATTTCTCCATTCAAAACGTAAGGCCTGGAAACTACAATCTCTACGCATGGGTGCCTGGCGTCATCGGCGATTACAAGTACGACGGCGACATCACTGTCACGCCGGCCAGTTCCACCAGCCTGAGCATGCTCATCTACGACCCTCCAAGACGAGGCCCAACTCTCTGGGAGATCGGCATCCCAGACCGGACGGCGGCCGAGTTCTTTATACCCGATCCCGAACCCACCCGCATTAACCGCTTCTACCACAATTCCAAAATTCAAACCTCAGATAAGTTCCGACAGTACGGCCTCTGGGAACGCTACGCCGATTTATACCCCCTTGAGGATCTGGTCTACACCGTCGGCACCGACGACTACCGCCGCCACTGGTTCTACGCTCACGTCACCAGAGCCACCGGATACGGGACCTACCAGGCTACAACGTGGCAGATCGTGTTTCGTCTAGAAGGGCCCATACAGACCGGCAACTATACGCTCCGGTTGGCCTTGGCCTCCTCCACCCAATCGGTGGTCGACATCCGGTTCAACAACCCGTCGGCCAGACGGGCTCATTTCTCGACCGGGTATCAGTCTGCAGGAAAAGATAACGCTATTGCAAGACATGGCATTCATGGGCTTTATTGGTTGTTCAACTTCGACGTTCCAAGTGGATATTTGATTGATGGAAACAACGTAATCTATTTAACACAAAGAACACATATGGGGCCTTTCCAAGGAGTAATGTACGACTACATACGATTCGAAGGTGTAGAATAA 1896 49.31 NIANYLSFQVVIDNGIVRVTFSSPEGNVIGIKYNDLDNVLEIHNAHYNRGYWDVVWNRPNKPSATDRVRATDFKVITATSDQVELSFTKYWDPSDSSSLPLNIDKRYILRRGDSGFYAYSIFERLDGWPQIDVDQIRIVYKVQRDKFHYMAVSDDRQRIMPTLQDRMTGQPLAFKEAVLLTQPMNSNLRGEVDDKYQYSIENMDNKVHGWVSRDPQVGFWMITPSYEFRTAGPLKQELTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFIYLNSDPTGTQTPGSLWEDAKNQMLVETSKWPYSFVEYEDFPSSDERGSVAGRLIVRDRYAEKWLTWADSAFVGLAPPGELGSWQRESKGYQFWTRADQQGHFSIQNVRPGNYNLYAWVPGVIGDYKYDGDITVTPASSTSLSMLIYDPPRRGPTLWEIGIPDRTAAEFFIPDPEPTRINRFYHNSKIQTSDKFRQYGLWERYADLYPLEDLVYTVGTDDYRRHWFYAHVTRATGYGTYQATTWQIVFRLEGPIQTGNYTLRLALASSTQSVVDIRFNNPSARRAHFSTGYQSAGKDNAIARHGIHGLYWLFNFDVPSGYLIDGNNVIYLTQRTHMGPFQGVMYDYIRFEGVE 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7246762 7249872 - Maker00012715 Lcy1g0848 622760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0848 631 SUPERFAMILY Galactose mutarotase-like 11 286 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Lcy1g0848 631 SUPERFAMILY Starch-binding domain-like 324 422 IPR013784 GO:0030246(InterPro)
Lcy1g0848 631 CDD RGL4_N 7 286 - -
Lcy1g0848 631 SUPERFAMILY Galactose-binding domain-like 431 628 IPR008979 -
Lcy1g0848 631 FunFam Rhamnogalacturonate lyase B 321 420 - -
Lcy1g0848 631 CDD RGL4_M 324 420 IPR029413 -
Lcy1g0848 631 Gene3D - 321 422 - -
Lcy1g0848 631 Gene3D - 4 297 IPR014718 GO:0030246(InterPro)
Lcy1g0848 631 Pfam Rhamnogalacturonate lyase family 9 192 IPR010325 -
Lcy1g0848 631 CDD RGL4_C 435 628 - -
Lcy1g0848 631 Pfam Polysaccharide lyase family 4, domain II 347 419 IPR029413 -
Lcy1g0848 631 Gene3D - 431 627 - -
Lcy1g0848 631 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 9 629 IPR051850 -
Lcy1g0848 631 Pfam Polysaccharide lyase family 4, domain III 433 627 IPR029411 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0848 Lcy-Chr1:7246762 Lcy9g1668 Lcy-Chr9:41877014 4.88E-234 dispersed
Lcy1g0848 Lcy-Chr1:7246762 Lcy13g1498 Lcy-Chr13:33627745 2.12E-260 wgd
Lcy1g0848 Lcy-Chr1:7246762 Lcy6g1092 Lcy-Chr6:12258211 8.94E-295 wgd
Lcy1g0848 Lcy-Chr1:7246762 Lcy9g1667 Lcy-Chr9:41867094 7.71E-269 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0848 K18195 - csv:101206696 1007.67