Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0849 ATGGGTCGAGGGAAGATTGTGATTAGAAGGATTGATAATTCTGCGAGCAGACAAGTGACTTTCTCCAAGAGGAGAAAGGGACTTATTAAAAAGGCTAAAGAGCTCGCAATTCTCTGTGATGCTGAAGTTGGACTCATCATTTTTTCCAGCTCTGGCAAACAGTATGACTTTGCAAACACTAGCATAGAGTCAGTAATTGAGAAATATAACAGGCGGAAGGAGGAAGATGAACTGCTCATGAATCCAGCTTCGGATGTCAAGTTATGGCAGAAGGAAGTAGCAACTCTAAGGCAACAGCTACTTAACTTGCAAGAGAATAATCGGAAATTAATGGGAGAGCAACTCTATGGTTTATCAATCAAAGACCTAAACAATCTTGAGAGTCAATTGGAGTTCAGTTTACAAAGTATCCGAATTAAAAAGGAATCCCTGTGGTGCCTGCAGGAACAGATATTAAATGATGAAATAAAAGAATTGAACAGAAAGGGAGTTCTGATGCACCAAGAAAATATAGAGCTGAGCAAGAAAGTAAATCTTTTTTGTCAAGAAAACATTGAATTACACAGAAAGGTTTATGGGCATGACTCGAGATCAGAGATGAACATAGCCACCGGAAACGCGTTGATTCCTTATGGAATTATCACCGGCGGCGGCGGCGGCGGCCCAGGTGCAGGCGACGCCGTGCGTGTGCCAATTCATCTTCTGCTCAGCCCGCCGCAGCAACAAAATTAA 732 42.49 MGRGKIVIRRIDNSASRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSSGKQYDFANTSIESVIEKYNRRKEEDELLMNPASDVKLWQKEVATLRQQLLNLQENNRKLMGEQLYGLSIKDLNNLESQLEFSLQSIRIKKESLWCLQEQILNDEIKELNRKGVLMHQENIELSKKVNLFCQENIELHRKVYGHDSRSEMNIATGNALIPYGIITGGGGGGPGAGDAVRVPIHLLLSPPQQQN 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7257480 7260527 + Maker00012255 Lcy1g0849 622761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0849 243 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0849 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0849 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0849 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0849 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lcy1g0849 243 Gene3D - 13 109 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0849 243 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lcy1g0849 243 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0849 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0849 243 Coils Coil 86 113 - -
Lcy1g0849 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lcy1g0849 243 Pfam K-box region 84 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lcy1g0849 243 ProSiteProfiles K-box domain profile. 86 183 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0849 Lcy-Chr1:7257480 Lcy5g2470 Lcy-Chr5:47435771 1.59E-33 dispersed
Lcy1g0849 Lcy-Chr1:7257480 Lcy13g1475 Lcy-Chr13:33364433 2.31E-32 wgd
Lcy1g0849 Lcy-Chr1:7257480 Lcy6g0403 Lcy-Chr6:3814021 5.57E-67 wgd
Lcy1g0849 Lcy-Chr1:7257480 Lcy9g1664 Lcy-Chr9:41832118 2.71E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19550 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0849 K09264 - csv:101206453 376.711