Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0855 | TTGGTGCAACTCCATGTTCATTATTCTGTTTTCCACTTTCTTCAGACCAAAAGAGGGAAGAAGAAGAAAAAGAAGAAAATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTGTTAGCTTCAACGCCTTGGACCTCTTCATATTCAAATGGGTTCAATGATTTCTTCCAAAATGGCTGGAATTTCGGTTCTTTTGATGAAAATCCCCAAATGGGTTCCTCTAATTTCCCCCATTTTCCTGGCATCCAAACAGCTACTGATTTTTCTTTCACCAACCAACAGTTTTACAGCAATTTCGTCGAGGGGTTTGCAATGCCGGAGCTGGATTCTTCATCTTACACTAAGAACAACGAAACCCCACCAGTTGCTTCGGAAGAAGTGAGTAATAAGAACAGTAGTTACCCTCCGCCGGCGATGGAGGAGGAAGAACTTGGTTTTATGGAGAGTGAAGCGGCTCCGAGTGTCTGCAAAGTGGAAATGGAGCAAATGGGTGGGCCTGAAACTAATGGTTTGAAAATGGGTGTGGCAGAATTGGGGAAAAGAAGCAACAAGGCTAAGAAGATTGAAGGACAACCCTCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTTAGAGCAATAGTCCCTAAAATAAGCAAGATGGATAGGACGTCTATACTTGGAGACACAATCGACTATGTGAAAGAGCTGCTTGAGAGAATCAATAACTTGAAAGAAGAAGAGGAAGTTGGTTTGGATTCAAATCATGTGAGCTTAAATGGGATCTCCAAGGAAGGGAAGTCCAATGAAGTTCTGAAGTCCAATGAAGTTCTAGTGAGAAATTCCCCGAAGTTCGATGTTGAAAAGAGGGAGAGGGAAACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGATTATTGCTGTCCACTGTCAACACGTTAGAAGCATTGGGCCTAGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGCAGGGAAGTGCTCAGAGAGCAGTGGCAAATTCTGATGATATAAAGGAGGCATTGTTCAGAAATGCAGGGTATGGAGGGAAGTGCTTGTAG | 1116 | 43.19 | LVQLHVHYSVFHFLQTKRGKKKKKKKMELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFGSFDENPQMGSSNFPHFPGIQTATDFSFTNQQFYSNFVEGFAMPELDSSSYTKNNETPPVASEEVSNKNSSYPPPAMEEEELGFMESEAAPSVCKVEMEQMGGPETNGLKMGVAELGKRSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEEEVGLDSNHVSLNGISKEGKSNEVLKSNEVLVRNSPKFDVEKRERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEQGSAQRAVANSDDIKEALFRNAGYGGKCL | 371 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 7309351 | 7314092 | + | Maker00013344 | Lcy1g0855 | 622767 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0855 | 371 | Gene3D | - | 182 | 253 | IPR036638 | GO:0046983(InterPro) | |
Lcy1g0855 | 371 | MobiDBLite | consensus disorder prediction | 110 | 135 | - | - | |
Lcy1g0855 | 371 | Coils | Coil | 229 | 249 | - | - | |
Lcy1g0855 | 371 | SMART | finulus | 196 | 245 | IPR011598 | GO:0046983(InterPro) | |
Lcy1g0855 | 371 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 193 | 252 | IPR036638 | GO:0046983(InterPro) | |
Lcy1g0855 | 371 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 134 | 366 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
Lcy1g0855 | 371 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 190 | 239 | IPR011598 | GO:0046983(InterPro) | |
Lcy1g0855 | 371 | MobiDBLite | consensus disorder prediction | 110 | 139 | - | - | |
Lcy1g0855 | 371 | Pfam | Helix-loop-helix DNA-binding domain | 197 | 239 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g0855 | Lcy-Chr1:7309351 | Lcy5g2093 | Lcy-Chr5:43991297 | 1.62E-36 | dispersed | |
Lcy3g0893 | Lcy-Chr3:31841532 | Lcy1g0855 | Lcy-Chr1:7309351 | 2.11E-14 | transposed | |
Lcy6g1062 | Lcy-Chr6:11624684 | Lcy1g0855 | Lcy-Chr1:7309351 | 2.90E-06 | transposed | |
Lcy1g0855 | Lcy-Chr1:7309351 | Lcy13g1454 | Lcy-Chr13:33099195 | 6.83E-86 | wgd | |
Lcy1g0855 | Lcy-Chr1:7309351 | Lcy9g1656 | Lcy-Chr9:41746891 | 2.76E-76 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19551 | None | None | None | None | Lcy | TF |
Pathway information
