Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0855 TTGGTGCAACTCCATGTTCATTATTCTGTTTTCCACTTTCTTCAGACCAAAAGAGGGAAGAAGAAGAAAAAGAAGAAAATGGAGCTCAGTCAACATGGTTTCTTAGAGGAGTTGTTAGCTTCAACGCCTTGGACCTCTTCATATTCAAATGGGTTCAATGATTTCTTCCAAAATGGCTGGAATTTCGGTTCTTTTGATGAAAATCCCCAAATGGGTTCCTCTAATTTCCCCCATTTTCCTGGCATCCAAACAGCTACTGATTTTTCTTTCACCAACCAACAGTTTTACAGCAATTTCGTCGAGGGGTTTGCAATGCCGGAGCTGGATTCTTCATCTTACACTAAGAACAACGAAACCCCACCAGTTGCTTCGGAAGAAGTGAGTAATAAGAACAGTAGTTACCCTCCGCCGGCGATGGAGGAGGAAGAACTTGGTTTTATGGAGAGTGAAGCGGCTCCGAGTGTCTGCAAAGTGGAAATGGAGCAAATGGGTGGGCCTGAAACTAATGGTTTGAAAATGGGTGTGGCAGAATTGGGGAAAAGAAGCAACAAGGCTAAGAAGATTGAAGGACAACCCTCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTTAGAGCAATAGTCCCTAAAATAAGCAAGATGGATAGGACGTCTATACTTGGAGACACAATCGACTATGTGAAAGAGCTGCTTGAGAGAATCAATAACTTGAAAGAAGAAGAGGAAGTTGGTTTGGATTCAAATCATGTGAGCTTAAATGGGATCTCCAAGGAAGGGAAGTCCAATGAAGTTCTGAAGTCCAATGAAGTTCTAGTGAGAAATTCCCCGAAGTTCGATGTTGAAAAGAGGGAGAGGGAAACTCGAATCGACATTTGCTGTGCGACGAGGCCAGGATTATTGCTGTCCACTGTCAACACGTTAGAAGCATTGGGCCTAGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGCAGGGAAGTGCTCAGAGAGCAGTGGCAAATTCTGATGATATAAAGGAGGCATTGTTCAGAAATGCAGGGTATGGAGGGAAGTGCTTGTAG 1116 43.19 LVQLHVHYSVFHFLQTKRGKKKKKKKMELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFGSFDENPQMGSSNFPHFPGIQTATDFSFTNQQFYSNFVEGFAMPELDSSSYTKNNETPPVASEEVSNKNSSYPPPAMEEEELGFMESEAAPSVCKVEMEQMGGPETNGLKMGVAELGKRSNKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEEEVGLDSNHVSLNGISKEGKSNEVLKSNEVLVRNSPKFDVEKRERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEQGSAQRAVANSDDIKEALFRNAGYGGKCL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7309351 7314092 + Maker00013344 Lcy1g0855 622767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0855 371 Gene3D - 182 253 IPR036638 GO:0046983(InterPro)
Lcy1g0855 371 MobiDBLite consensus disorder prediction 110 135 - -
Lcy1g0855 371 Coils Coil 229 249 - -
Lcy1g0855 371 SMART finulus 196 245 IPR011598 GO:0046983(InterPro)
Lcy1g0855 371 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 252 IPR036638 GO:0046983(InterPro)
Lcy1g0855 371 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 134 366 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Lcy1g0855 371 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983(InterPro)
Lcy1g0855 371 MobiDBLite consensus disorder prediction 110 139 - -
Lcy1g0855 371 Pfam Helix-loop-helix DNA-binding domain 197 239 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0855 Lcy-Chr1:7309351 Lcy5g2093 Lcy-Chr5:43991297 1.62E-36 dispersed
Lcy3g0893 Lcy-Chr3:31841532 Lcy1g0855 Lcy-Chr1:7309351 2.11E-14 transposed
Lcy6g1062 Lcy-Chr6:11624684 Lcy1g0855 Lcy-Chr1:7309351 2.90E-06 transposed
Lcy1g0855 Lcy-Chr1:7309351 Lcy13g1454 Lcy-Chr13:33099195 6.83E-86 wgd
Lcy1g0855 Lcy-Chr1:7309351 Lcy9g1656 Lcy-Chr9:41746891 2.76E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19551 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0855 - - - 0.0