Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0870 ATGCGTCTTCTTCTTCTTCTCCTCTTTCTTCTGCAACTCCACATTCACCATTCCTTCTCTGCTCGCGTTTCTGAGTACCGAGCCCTTCTCTCCATCAAAACCTCCATTTCCGGCGACCCCAAATCCTCACTTTCTTCGTGGAACGCCTCCACTAGTCACTGTTCTTGGTTTGGGGTCACTTGTGATTTTCGTCGCCATGTCACTGCCCTAGACCTCTCTGGTCTCGGCCTTTCTGGTTCTCTTTCCCCTGATGTTGCCTTTTTGAGGTTTCTTACTAATCTCTCTCTCGCTGCTAATGAGTTTTCCGGTCCAATCCCGCCGGAGATTTCTTCAATCTCTTCGCTTCGGTCCCTTAACCTGTCTAATAATGTGTTTGATGGGTCCTTCCCTTCGCGCCTTTCGCAGCTTAAGAATCTGCAGGTTCTTGACTTGTATAACAACAATATGACTGGGGATTTCCCCATTGTGGTCACCGAAATGATGAGCCTCCGCCATTTGCATTTGGGTGGGAATTTCTTCGCCGGACGGATCCCGCCGGAGGTCGGTCGGATGGAGTCCTTGGAGTACTTGGCGGTTTCTGGTAACGAACTTAGCGGTTCGATTCCGCCGGAGATCGGAAACTTGACGAACCTTCGTGAGCTCTACATTGGCTACTTCAACGCCTACGACGGCGGGATTCCGGCAGAGATTGGGAATTTGACGGAGTTGGTACGGTTGGACGCAGCGAACTGTGGACTGTCAGGCCGGATTCCACCGGAGCTGGGAAAGCTGAAGAACCTCGATACTCTATTTCTTCAAGTGAATGCTCTGTCTGGGCCATTGACGCTGGAGATTGGAGAGTTGAAAAGTTTGAAATCGTTGGATTTATCGAACAATATGCTTGTGGGTGAGATTCCCGACTCGTTCACCGAGTTGAAGAACTTGACACTGTTGAATCTGTTTAGAAACAAGCTACATGGGGCGATTCCTTCCTTTATTGGCGACTTGCCAAAACTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCGATTCCACAGAACCTGGGGAAGAACGGAATGCTTCAGATTTTGGATCTTTCTTCGAACAAGCTGACTGGAACTCTTCCTCCCGATATGTGCTACGGTAATCGCCTTCAAACTCTGATCGCATTGAGCAATTTCTTGTTTGGTCCAATTCCTGAGTCGCTAGGCAAATGCGTTTCGCTTAATCGTATTCGTATGGGGGAAAATTTCCTCAATGGATCCATTCCAAAAGGGCTTCTGAGTCTGCCGAAGCTCTCCCAGGTTGAGTTACAGGACAATTACCTCTCGGGTGAGTTCCCAATAACCGATTCAATCTCAGTGAATCTCGGCCAGATTAGTCTCTCGAACAACCGCCTCTCTGGGTCGATTCCGCCGACAATCGGCAACTTCTCCGGCGTCCAGAAACTACTTCTCGACGGAAACAAGTTCTCCGGTCAAATCCCACCTGAGATTGGGCGGTTACAGCAGCTTTCGAAGATTGATTTCAGTAACAATAAGTTGTCGGGTCCAATCGTACCGGAGATTAGCCAATGCAAGCTTCTAACCTTCGTCGATCTCAGCCGAAACGAGCTCTCGGGTGAAATTCCGAACGAGATTACCAGTATGAGGATATTGAATTATCTAAATCTCTCAAAAAACCATTTAGTCGGTGGAATCCCAGCTTCCATAGCCAGCATGCAGAGCTTAACTTCTGTGGATTTCTCATACAACAACCTCTCTGGTTTAGTTCCGGGAAGTGGGCAATTCAGTTACTTCAATTACACATCGTTTTTGGGCAATCCCGATCTCTGCGGCCCATACTTAGGGCCATGCAAAGATGGGGTTGCCAATAGCAATTACCAACAACATGTAAAAGGTCCCCTCTCTGCTTCCCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCAATTGCATTTGCAGTTGCTGCCATCATCAAAGCTCGATCATTAAAGAGAGCCAGTGACTCTCGGGCTTGGAAATTAACATCCTTCCAACGCCTAGATTTCACAGTTGATGACGTTCTTGATTGCTTGAAAGAGGATAACATTATTGGAAAAGGAGGGGCTGGAATTGTCTATAAAGGGGCGATGCCAAGTGGTGACCATGTCGCCGTCAAAAGGCTGCCGGCGATGAGCCGAGGGTCGTCCCACGACCATGGATTCAACGCTGAGATACAAACTCTTGGGAGGATTCGACACAGACACATCGTTAGACTATTGGGATTTTGTTCAAACCATGAGACTAATCTTTTGATCTATGAGTATATGCCTAATGGGAGCTTGGGGGAAGTTCTTCATGGCAAAAAAGGGGGTCACCTTCAGTGGGATACAAGGTATAAGATTGCCATTGAAGCTGCTAAGGGGCTTTGCTATCTCCACCATGATTGCTCGCCACTCATTGTTCATCGAGATGTGAAATCAAACAACATACTTCTTGACACTAATTTTGAAGCTCATGTTGCTGATTTTGGCCTGGCCAAGTTTTTGCAGGATTCCGGCGCTTCTGAGTGCATGTCTGCCATTGCTGGTTCTTACGGATATATTGCCCCAGAGTACGCCTACACACTCAAAGTTGACGAGAAGAGTGACGTGTATAGCTTTGGGGTTGTCCTCTTGGAGCTTGTCAGTGGAAGAAAACCCGTTGGAGAATTCGGGGACGGTGTCGACATAGTTCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGTAGTGAAAGTCCTCGATCCAAGGCTCTCCTCCGTCCCTCTTCACGAAGTGATGCACGTCTTCTACGTTGCGATGCTGAGCGTCGAAGAACAGGCGGTGGAGCGCCCGACAATGCGGGAAGTGATCCAAATCCTATCGGAGATTCCACAGCCACCATGTTCAAAACCAGGAGACTCAACACTCCCTAACTCCTCACCACCACCACCTCCAGCACCAGCCGCCGCATTGGAGCCTCCAACAACGGGAACCAAGAACAAAAAGGACCAGCAGCAGCAGCCGCAGCCGCCACCGGATCTTCTCAGCATTTGA 3054 48.49 MRLLLLLLFLLQLHIHHSFSARVSEYRALLSIKTSISGDPKSSLSSWNASTSHCSWFGVTCDFRRHVTALDLSGLGLSGSLSPDVAFLRFLTNLSLAANEFSGPIPPEISSISSLRSLNLSNNVFDGSFPSRLSQLKNLQVLDLYNNNMTGDFPIVVTEMMSLRHLHLGGNFFAGRIPPEVGRMESLEYLAVSGNELSGSIPPEIGNLTNLRELYIGYFNAYDGGIPAEIGNLTELVRLDAANCGLSGRIPPELGKLKNLDTLFLQVNALSGPLTLEIGELKSLKSLDLSNNMLVGEIPDSFTELKNLTLLNLFRNKLHGAIPSFIGDLPKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGTLPPDMCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGENFLNGSIPKGLLSLPKLSQVELQDNYLSGEFPITDSISVNLGQISLSNNRLSGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKLSGPIVPEISQCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLVGGIPASIASMQSLTSVDFSYNNLSGLVPGSGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPLSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASDSRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGASECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEVVKVLDPRLSSVPLHEVMHVFYVAMLSVEEQAVERPTMREVIQILSEIPQPPCSKPGDSTLPNSSPPPPPAPAAALEPPTTGTKNKKDQQQQPQPPPDLLSI 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7482960 7486925 + Maker00013428 Lcy1g0870 622782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0870 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 82 325 - -
Lcy1g0870 1017 Gene3D Ribonuclease Inhibitor 273 372 IPR032675 -
Lcy1g0870 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0870 1017 MobiDBLite consensus disorder prediction 976 991 - -
Lcy1g0870 1017 SUPERFAMILY Protein kinase-like (PK-like) 681 960 IPR011009 -
Lcy1g0870 1017 Pfam Leucine Rich Repeat 451 473 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 Pfam Leucine Rich Repeat 236 257 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 Pfam Leucine Rich Repeat 500 521 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 Pfam Leucine Rich Repeat 477 497 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 Pfam Leucine Rich Repeat 356 375 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 Pfam Leucine Rich Repeat 524 545 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 SMART serkin_6 689 937 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0870 1017 Gene3D Ribonuclease Inhibitor 373 615 IPR032675 -
Lcy1g0870 1017 Gene3D Phosphorylase Kinase; domain 1 655 766 - -
Lcy1g0870 1017 Pfam Leucine rich repeat 114 171 IPR001611 GO:0005515(InterPro)
Lcy1g0870 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 767 976 - -
Lcy1g0870 1017 MobiDBLite consensus disorder prediction 962 1017 - -
Lcy1g0870 1017 Gene3D Transferase(Phosphotransferase) domain 1 767 969 - -
Lcy1g0870 1017 MobiDBLite consensus disorder prediction 997 1017 - -
Lcy1g0870 1017 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 963 IPR050647 -
Lcy1g0870 1017 Pfam Protein kinase domain 691 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0870 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 658 766 - -
Lcy1g0870 1017 Gene3D Ribonuclease Inhibitor 22 176 IPR032675 -
Lcy1g0870 1017 Gene3D Ribonuclease Inhibitor 177 272 IPR032675 -
Lcy1g0870 1017 SMART LRR_typ_2 112 136 IPR003591 -
Lcy1g0870 1017 SMART LRR_typ_2 329 353 IPR003591 -
Lcy1g0870 1017 SMART LRR_typ_2 281 305 IPR003591 -
Lcy1g0870 1017 SMART LRR_typ_2 569 592 IPR003591 -
Lcy1g0870 1017 SMART LRR_typ_2 354 377 IPR003591 -
Lcy1g0870 1017 SMART LRR_typ_2 184 208 IPR003591 -
Lcy1g0870 1017 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0870 1017 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 333 618 - -
Lcy1g0870 1017 SUPERFAMILY RNI-like 70 391 - -
Lcy1g0870 1017 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Lcy1g0870 1017 SUPERFAMILY L domain-like 298 614 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0202 Lcy-Chr1:1850000 Lcy1g0870 Lcy-Chr1:7482960 1.76E-46 dispersed
Lcy1g0870 Lcy-Chr1:7482960 Lcy6g1085 Lcy-Chr6:12136941 3.58E-237 dispersed
Lcy1g0870 Lcy-Chr1:7482960 Lcy1g0871 Lcy-Chr1:7511055 4.95E-169 tandem
Lcy12g2080 Lcy-Chr12:42168094 Lcy1g0870 Lcy-Chr1:7482960 4.56E-38 transposed
Lcy4g2049 Lcy-Chr4:47064171 Lcy1g0870 Lcy-Chr1:7482960 1.32E-39 transposed
Lcy6g1176 Lcy-Chr6:13688637 Lcy1g0870 Lcy-Chr1:7482960 8.32E-159 transposed
Lcy9g2275 Lcy-Chr9:47182689 Lcy1g0870 Lcy-Chr1:7482960 8.87E-151 transposed
Lcy1g0870 Lcy-Chr1:7482960 Lcy13g1447 Lcy-Chr13:32970137 1.01E-73 wgd
Lcy1g0870 Lcy-Chr1:7482960 Lcy4g0134 Lcy-Chr4:1752421 1.24E-76 wgd
Lcy1g0870 Lcy-Chr1:7482960 Lcy6g1083 Lcy-Chr6:12087105 1.79E-77 wgd
Lcy1g0870 Lcy-Chr1:7482960 Lcy9g1649 Lcy-Chr9:41629593 2.49E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65642 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0870 - - - 0.0