Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0871 ATGCGATTTGTTGTTGTTATTCTCCTTCTGCAACTTCTGCAACTTCACTTTTCCCCTTCCTTCTCTGCCCTCCTAACTGAATCCCAAGCCCTTCTCTCTCTCAGAAATTCCATTTCCGATGACCCTCGTTCTTCTCTCTCCTCCTGGAACGCCACCACCGGCCACTGCACCTGGGCCGGCGTCACATGCGACGCCCGCGGCCGCGTCGTCGGCCTCGGCCTCTCTTCCCTCGACCTCACCGGCACCCTTTCCCCCGACCTTGCCTCTCTTCCATTTCTCACCAATGTTTCCTTCGACCTCAACAAGTTTTCCGGCGGAATCCCACCGGAGATTGCATCGATTTCTTCTCTCCGGCATCTCAATCTCTCTAGCAACGTCCTCAATGGGTCGATTCCTCGCGAGTTTTCGCAGCTGAAGAATCTACTGGTTCTTGATGTTTATAACAATAACATGACTGGCGATTTCCCCAGAGTGGTCACTGAAATGCCCAACCTCCGCCATTTGCAGCTTGGGGGAAATTTCTTCACCGGTCGGATCCCTCCGGAGGTCGGACGCTTGCAGTCCTTGGAGTTTTTGGCGATTCAGGGCAATGACCTTGAAGGTCCGATACCGGCGGCGATCGGAAACTTGACGAAGCTTCGGGAACTCTTCATTGGTTACTACAATACCTTCGTCGGTGGAATTCCGGCGGCGATAGGGAACTTGACGGAGTTAGTTCTGTTAGACGCCGCGAGCTGTGGGTTGTCCGGAAAGCTCCCGCCCGAGCTCGGGAAGTTGCAGAAGCTCATTAAACTGTTCCTTCAACAAAATGCTCTGTCTGGGCCATTGCCGGCACTAGAAGGATTGAAGAGCATAGAAGCGTTTGATATATCATGCAATATGTTTGTTGGTGAAATACCCATTTCTTTTGCAGAGTTTAAGAACTTGAGGCTATTGCAACTTTTCGACAACAAGCTCTCCGGGGAAATTCCGGGATTCCTAGGCGACCTCCCAAAGCTGGAGATATTGCAGTTATGGAACAACAATTTCACAGGTTCGATTCCTCGGAATTTGGGGAAGAACGGAATGATTCGGATTTTTGATCTTGCTTTCAACCAGTTGACAGGTACGATTCCTCCTGAAATTTGCCATGGGAGTAAGCTTGAAGTTTTGATCGCTATGGGCAATTCCCTGTCTGGTTCGATCCCGGAGTCGTTAGGAAATTGTATTTCACTTACGCGTATTCTTCTGTGGGGCAACGCTCTCAATGGATCAATCCCCAAGGGTCTTTTGAGTTTGCCAAATCTCTCTCAGGTTGATTTGCACGACAATTTTCTATCCGGAGAACTTCCCATAAACGATCCTGTCTCAGTAAACCTTCTTCAGATTAGTTTATCGAACAATATGCTCTCTGGATCCTTGCCGCCCACCATCGGCAGCCTTTTGGCCGTTCAGAAGCTTCTTCTTGATCGGAATGAGTTTTCCGGTCAGATTCCTTCAAAGATTGGGAGATTACAGCAACTGTCTCGGATAAATTTCAGCCACAATAAGTTCTCTGGTAGAATTGTGGCGGAGATAAGTGAGTGCAAGCACTTGATCTTCCTTGATCTCAGTGGAAATGAGCTTTCTGGTGAAATTCCTAACAATATTACCAACATGAAGTTATTGACTTATATGAATCTCTCAAGAAACCATTTAGTTGGGTCCATTCCTGCTTCAATAGTTAATATGCAGAGCTTAACCTCTGTGGACTTTTCATACAACAATCTCTCTGGTTTGGTTTTGGGAACTGGGCAATTTGGTTACTTCAATTACACATCATTTCTAGGCAACCCTTATCTCTGTGGCGCATATTTGGGGCCTTGCAAAGATGGGGTTGGCACTAGCAATAAGCAAGAACATATGAAAGGCTCTCTCTCAACTCCTCTCAGGCTCCTGCTAGTTTTTGGTTTTTTTTTTTGTTTAATTGCTGTGACCTTTGCATTGATCTTCAAAGTTCGGTCATTGAAGAGAGCAAGGGAGTTTAGAGGATGGAGATTAACAGCCTTCCAACGCTTGAGTTTCTCGGTCGATGAGGTCTTAGATTGCCTTAAGAAGGAAAGTGTTATTGTAAAAGGATGTTATGGCACAGTGTACGAAGGAGTGATGCCAAGTGGTGATCAGGTCACTGTGAAAAGGCTTCCAAAGATGAGCAATGGGTGTTCTAATGATCATGGATTCGATGTCGAGATACAAGCTCTTGGGAGGATTCGACACCGTCACATCGTAAGATTATTGGGTTTCTGTTCAAACCATGACACTAATCTTTTGATATATGAGTACATGCCTAATGGGAGCCTCTTTGAGGTTCTCCATGGCAAGAAAGGAGGTCACTTGCTCTGGGATACGAGGTACAAGATAGCCATTGGAACTGCGAATGGACTATGCTACCTTCACCACCATTGCTCACCGCCGATTGTTCATCGAGATGTGAAATCAAACAACATCATGCTCGATACCAATTTTGATGCTCAGGTCGCGAATTCCGGGCTTGCGAAGTTCTTACGAGATTCAGGCACATTGGATAGACCAGCTCTAGCACCAGAACATGTCTATATTCAGGAAGCCGACGAGAAGTGGGACGTATATAGCTTTGGTGTCGTCCTCTTGGAACTTGTTAGCGGTAGGAATGCAGTCGGAGAATTAAGCACCGGTGTCGACATAGTTCGATGGATAAGAAAAATGACAGACTCCGAAAAGGAAGCAATACATAAAATCGTCGATCAAAGACTCTCCTCTGTCCCTCTCGACGAGGTGATGCACGTACTCAATGTCGCCATGCTCTGCACTGAAGAAGAGGCAGCAAAGCGTCCCACGATGCGGGAAGTCGTGCGAATCTTAACGGAGCATCAGCAACAATCATTGTCAAACGAGGATAGAGATACTTGA 2907 46.75 MRFVVVILLLQLLQLHFSPSFSALLTESQALLSLRNSISDDPRSSLSSWNATTGHCTWAGVTCDARGRVVGLGLSSLDLTGTLSPDLASLPFLTNVSFDLNKFSGGIPPEIASISSLRHLNLSSNVLNGSIPREFSQLKNLLVLDVYNNNMTGDFPRVVTEMPNLRHLQLGGNFFTGRIPPEVGRLQSLEFLAIQGNDLEGPIPAAIGNLTKLRELFIGYYNTFVGGIPAAIGNLTELVLLDAASCGLSGKLPPELGKLQKLIKLFLQQNALSGPLPALEGLKSIEAFDISCNMFVGEIPISFAEFKNLRLLQLFDNKLSGEIPGFLGDLPKLEILQLWNNNFTGSIPRNLGKNGMIRIFDLAFNQLTGTIPPEICHGSKLEVLIAMGNSLSGSIPESLGNCISLTRILLWGNALNGSIPKGLLSLPNLSQVDLHDNFLSGELPINDPVSVNLLQISLSNNMLSGSLPPTIGSLLAVQKLLLDRNEFSGQIPSKIGRLQQLSRINFSHNKFSGRIVAEISECKHLIFLDLSGNELSGEIPNNITNMKLLTYMNLSRNHLVGSIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCKDGVGTSNKQEHMKGSLSTPLRLLLVFGFFFCLIAVTFALIFKVRSLKRAREFRGWRLTAFQRLSFSVDEVLDCLKKESVIVKGCYGTVYEGVMPSGDQVTVKRLPKMSNGCSNDHGFDVEIQALGRIRHRHIVRLLGFCSNHDTNLLIYEYMPNGSLFEVLHGKKGGHLLWDTRYKIAIGTANGLCYLHHHCSPPIVHRDVKSNNIMLDTNFDAQVANSGLAKFLRDSGTLDRPALAPEHVYIQEADEKWDVYSFGVVLLELVSGRNAVGELSTGVDIVRWIRKMTDSEKEAIHKIVDQRLSSVPLDEVMHVLNVAMLCTEEEAAKRPTMREVVRILTEHQQQSLSNEDRDT 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7511055 7514722 + Maker00013051 Lcy1g0871 622783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0871 968 Gene3D Ribonuclease Inhibitor 24 179 IPR032675 -
Lcy1g0871 968 FunFam Leucine-rich repeat receptor-like kinase protein FLORAL ORGAN NUMBER1 26 135 - -
Lcy1g0871 968 SMART LRR_typ_2 330 354 IPR003591 -
Lcy1g0871 968 SMART LRR_typ_2 114 138 IPR003591 -
Lcy1g0871 968 SMART LRR_typ_2 570 593 IPR003591 -
Lcy1g0871 968 SMART LRR_typ_2 162 186 IPR003591 -
Lcy1g0871 968 SUPERFAMILY Protein kinase-like (PK-like) 683 953 IPR011009 -
Lcy1g0871 968 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 12 956 IPR050647 -
Lcy1g0871 968 Gene3D Ribonuclease Inhibitor 180 280 IPR032675 -
Lcy1g0871 968 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 334 619 - -
Lcy1g0871 968 Gene3D Phosphorylase Kinase; domain 1 663 767 - -
Lcy1g0871 968 Gene3D Ribonuclease Inhibitor 281 358 IPR032675 -
Lcy1g0871 968 SMART serkin_6 690 952 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0871 968 ProSiteProfiles Protein kinase domain profile. 690 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0871 968 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Lcy1g0871 968 Gene3D Ribonuclease Inhibitor 359 621 IPR032675 -
Lcy1g0871 968 Pfam Leucine rich repeat 116 173 IPR001611 GO:0005515(InterPro)
Lcy1g0871 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0871 968 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 768 961 - -
Lcy1g0871 968 Gene3D Transferase(Phosphotransferase) domain 1 768 968 - -
Lcy1g0871 968 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 659 767 - -
Lcy1g0871 968 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515(InterPro)
Lcy1g0871 968 Pfam Leucine Rich Repeat 452 474 IPR001611 GO:0005515(InterPro)
Lcy1g0871 968 Pfam Leucine Rich Repeat 357 377 IPR001611 GO:0005515(InterPro)
Lcy1g0871 968 Pfam Leucine Rich Repeat 380 402 IPR001611 GO:0005515(InterPro)
Lcy1g0871 968 Pfam Leucine Rich Repeat 524 546 IPR001611 GO:0005515(InterPro)
Lcy1g0871 968 Pfam Leucine Rich Repeat 332 353 IPR001611 GO:0005515(InterPro)
Lcy1g0871 968 Pfam Leucine Rich Repeat 549 570 IPR001611 GO:0005515(InterPro)
Lcy1g0871 968 SUPERFAMILY L domain-like 355 614 - -
Lcy1g0871 968 SUPERFAMILY RNI-like 72 384 - -
Lcy1g0871 968 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 136 222 - -
Lcy1g0871 968 Pfam Protein tyrosine and serine/threonine kinase 691 953 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0871 Lcy-Chr1:7511055 Lcy6g1085 Lcy-Chr6:12136941 2.83E-166 dispersed
Lcy1g0870 Lcy-Chr1:7482960 Lcy1g0871 Lcy-Chr1:7511055 4.95E-169 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65643 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0871 - - - 0.0