Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0879 ATGGGTTTTGATGATCTTTCTAATACAGGCCTTCTACTCGGCTTGGGATTGACGCTTCCCTCGAAACCGGCCGATCTTTCTCACAAACCCAAGAAGCCCGTCGATTTGTTCACCTTTTCTGCCGCCGAATCCGAGCCTTCTTTAACTCTCGGGCTTTCTACTGCCGATACTTACCCGCACCCTGCGCCTGACACCGCTGACTTGTGTCGCCAACCGTCCCCTCACAGCGCGGTCTCATCCTTCTCCGGCGGCAGGGTTGTCAAGCGTGAAAGAGACGTTTCCGGTGAGGATCTTGAAGAAGAGAAAGCTTCTTCTCGAGTTAGTGATGAAGATGAAGATGGGTCTAATGCCAGGAAAAAACTTAGGCTAACTAAAGAACAATCTGCCCTCTTGGAGGAGAGCTTCAAACTTCACAGCACTCTCAACCCTAAGCAAAAGCAAGCCTTAGCCAGAGAGTTAAATCTTCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAGACGCTAACGGACGAAAACAGGAGGCTGCAAAAAGAGCTGCAGGAACTAAAAGCCCTGAAACTAGCGCAGCCTCTGTTCATGCAAATGCCGGCGGCGACACTCACCATGTGCCCGTCCTGCGAGAGGATCGGCGGCGGTGGCGCCGCTGTTAACGGCGACGGAAATTCCAAGGGCCCATTTTCGATGGCTCCCAAGGCCCGGTTTTACAAAGCCTTCACCAATCCTTCTGCTGCTTGCTAA 804 51.74 MGFDDLSNTGLLLGLGLTLPSKPADLSHKPKKPVDLFTFSAAESEPSLTLGLSTADTYPHPAPDTADLCRQPSPHSAVSSFSGGRVVKRERDVSGEDLEEEKASSRVSDEDEDGSNARKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLAQPLFMQMPAATLTMCPSCERIGGGGAAVNGDGNSKGPFSMAPKARFYKAFTNPSAAC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7567121 7569505 - Maker00013547 Lcy1g0879 622791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0879 267 ProSitePatterns 'Homeobox' domain signature. 149 172 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lcy1g0879 267 CDD homeodomain 118 175 IPR001356 GO:0003677(InterPro)
Lcy1g0879 267 Gene3D - 111 179 - -
Lcy1g0879 267 SUPERFAMILY Homeodomain-like 108 175 IPR009057 -
Lcy1g0879 267 FunFam Homeobox-leucine zipper protein 18 103 179 - -
Lcy1g0879 267 MobiDBLite consensus disorder prediction 85 121 - -
Lcy1g0879 267 Pfam Homeodomain 118 172 IPR001356 GO:0003677(InterPro)
Lcy1g0879 267 ProSiteProfiles 'Homeobox' domain profile. 114 174 IPR001356 GO:0003677(InterPro)
Lcy1g0879 267 SMART halz 174 217 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0879 267 SMART HOX_1 116 178 IPR001356 GO:0003677(InterPro)
Lcy1g0879 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 32 237 IPR050762 -
Lcy1g0879 267 Pfam Homeobox associated leucine zipper 174 208 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0879 267 Coils Coil 180 210 - -
Lcy1g0879 267 MobiDBLite consensus disorder prediction 48 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0879 Lcy-Chr1:7567121 Lcy5g0586 Lcy-Chr5:6679979 1.24E-69 dispersed
Lcy10g1451 Lcy-Chr10:38288078 Lcy1g0879 Lcy-Chr1:7567121 7.44E-44 transposed
Lcy2g0336 Lcy-Chr2:2770043 Lcy1g0879 Lcy-Chr1:7567121 3.85E-51 transposed
Lcy6g2126 Lcy-Chr6:45004693 Lcy1g0879 Lcy-Chr1:7567121 8.86E-68 transposed
Lcy1g0879 Lcy-Chr1:7567121 Lcy6g1074 Lcy-Chr6:11853768 2.39E-110 wgd
Lcy1g0879 Lcy-Chr1:7567121 Lcy9g1997 Lcy-Chr9:44836583 7.93E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19556 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0879 K09338 - csv:101218782 426.787