Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0889 ATGAATAATGTTAATGGCAACAACTGTAACTGGCTAGGTTTTTCTGTCTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTACTGCTGTCTCCTCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGCATAACTATGGCATTTGCTATGGTGTTGATGGAGAACATGGTGGCTTTTATTCACCATTGTCTGTCATGCCACTCAAGTCTGATGGCTCAATTTGTTCAATGGAAGCTCTCAGTAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGCGGTGCAACTATGGGGTCCCATCACTATGAAAGTAATGACAGTGTAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTTTGCACATTTCTCATCCTTAAGAAGCCGTGAAATGATGCTTCAAGACTCTAAGGTAATCCTGCCTGATGGGTGCAATATGCAGCAGCAGCAGCAGCACCCAACAGTGGCAGAGAGTGAAATTTCTGGTATGAAGAATTGGGCTGTTCCCAGGAACTATGCTGCCACTAATAATAGTTCATTCGAGCAGAAGATGGTGAGTTGCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGTGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACGGCCACACAGCATGTCTCACCCGCCTTGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCACGAGAAGCTGGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGACACCTTTGGACAGAGAACCTCTCAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTTGGAAAACTATCAGAAAGAACTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGGCAAGCTCATTTTTACCACATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGCAATAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCGGCCGAGGCCTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCTGTTACTAATTTCGACATTACGAGGTATGACGTGGAGCGGATCATCGCAAGCAATACCCTGCTTAGTGGTGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCTCTTAGACAAAGCCCTCCAACTCACAACAGCAATTCAGAAGCTATGCCTTTGCCCTCACAGAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTTTATCAGTCATCTCAGCAGCTCATTCCAAAACCTCGGTTGTTATCTGCGATAAACGATGATGGATCACAACTAGGAGTCGAAGACTCCACCAAAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGCCCAGACAAGACGAGCCTTTCAATGGTATTCGGAATGCCTCAATCGACATCTAAGCCGTTTGCTGCCTCGGCTAGTAATATGAACTCCTCCTGGATTGCATCTGCCCAGCAGTTGAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1755 45.93 MNNVNGNNCNWLGFSVSPNVNMELSSSSATAVSSSIPANLFHSPSQHNYGICYGVDGEHGGFYSPLSVMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDSVAMALSLDSIFCHQNPTHEPNNQPFAHFSSLRSREMMLQDSKVILPDGCNMQQQQQHPTVAESEISGMKNWAVPRNYAATNNSSFEQKMVSCMSENGGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPALADCSAMDTKKRGHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVGKLSERTRGNEKHEQAGICRSPEKASSFLPHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRQSPPTHNSNSEAMPLPSQSSQSESDWKMALYQSSQQLIPKPRLLSAINDDGSQLGVEDSTKMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNSSWIASAQQLRAANCMSQLPVFAAWTDT 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7703336 7706467 - Maker00013386 Lcy1g0889 622801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0889 584 MobiDBLite consensus disorder prediction 316 360 - -
Lcy1g0889 584 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 205 341 - -
Lcy1g0889 584 SUPERFAMILY DNA-binding domain 358 409 IPR016177 GO:0003677(InterPro)
Lcy1g0889 584 MobiDBLite consensus disorder prediction 316 345 - -
Lcy1g0889 584 PRINTS Ethylene responsive element binding protein signature 293 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0889 584 PRINTS Ethylene responsive element binding protein signature 390 410 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0889 584 MobiDBLite consensus disorder prediction 439 468 - -
Lcy1g0889 584 CDD AP2 358 410 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0889 584 ProSiteProfiles AP2/ERF domain profile. 292 408 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0889 584 MobiDBLite consensus disorder prediction 429 468 - -
Lcy1g0889 584 Gene3D AP2/ERF domain 355 410 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0889 584 Gene3D AP2/ERF domain 291 342 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0889 584 SMART rav1_2 292 414 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0889 Lcy-Chr1:7703336 Lcy4g1350 Lcy-Chr4:32415061 8.70E-56 dispersed
Lcy1g0889 Lcy-Chr1:7703336 Lcy13g2154 Lcy-Chr13:40451160 7.04E-85 wgd
Lcy1g0889 Lcy-Chr1:7703336 Lcy9g2006 Lcy-Chr9:44947296 4.73E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19558 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0889 K09285 - csv:101203323 623.239