Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g0909 | ATGGAAAGGTTTTTGGAGGAGAATTTTGGGGGCGTCAAACCGAAAAACTCGTCTGAGGAGGTGCTGCAGAGGTGGAGGGAGCTTTGTGGAGTGGTCAAGAACCCCAAAAGGAGGTTTCGATTCACCGCCAATCTCTCCAAGCGTGGCGAAGCTGCTGCTATGCGCCAGAATAATCAGGAGAAGTTGAGGATCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATCCAAGGTGTGCAACCAAGTGATTATACTGTTCCGGAGGAAGTCAAGGCTGCAGGTTTCCATATTTGTGCTGATGAACTCGGGTCTATTGTTGAAGGCCATGATCCAAAGAAGTTTAAATATCATGGTGGGGTTGAAGGGATTGCTCAAAAACTCTGTACATCAACAACAAATGGGCTTAATGGTGACGCTGATGCACTCAACCGTAGGCAAGACATTTATGGAGTTAATAAATTTGCTGAGAGTGAACAGAGGAGCTTCTTGGTGTTCGTTTGGGAGGCCCTCCAAGACATGACTCTCATGATCCTTGGACTCTGTGCTTTCGTCTCTTTGGTGGTTGGCATAATAACAGAAGGATGGCCACATGGGGCTCACGATGGCCTTGGAATTGTTGCCAGTATCTTGTTAGTTGTATTTGTCACAGCAACTAGTGATTATCGACAATCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTTACAAGGAACGGTTATAGACAGAAAATGTCTATCTATGATTTACTTCCTGGAGATATTGTTCACCTGTCTATTGGGGATCAAGTCCCTGCAGATGGACTTTTTGTTTCAGGGTTTTCTGTATTGATTGATGAGTCAAGTTTGACCGGAGAAAGTGAGCCAGTGATGGTGAGTGCAGAAAACCCTTATCTTCTATCAGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGGTCACTACTGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGCGGAGATGATGAAACTCCATTGCAGGTGAAATTGAATGGAGTAGCAACAATTATTGGGAAAATAGGTCTTTTCTTTGCCATCATCACTTTCGCTGTGTTGGTTCAAGGATTGGTTAGCCATAAACTCCGAGAAGGGACTCTCTGGAGCTGGTCTGGTGATGAAGCTTTAGAGATATTGGAATTCTTTGCTGTTGCAGTCACGATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACATTAAGCCTTGCATTTGCCATGAAGAAAATGATGAATGATAAAGCACTTGTTCGTCACTTGGCAGCTTGTGAAACTATGGGTTCTGCCACAAGTATTTGTAGTGATAAAACTGGAACAATCACTACAAATCACATGACAGTAGTCAAATCATTCATTTGCATGAATGTCAAGGAAACAAGTAATAATCCATCAAGCATCTGCGCTGACCTTCCAGCCTCTGTTATCAAACTTCTTCTACAATCAATATTCAACAACACTGGCGGTGAAGTCGTAATCAACAAAGATGGCAAACGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTTTCACTTGGTGGGGATTTCCAGGCTGAGAGACAGGCAGGTAAACTTATTAAAGTTGAGCCATTCAACTCTTTGAAAAAGCGGATGGGTGTTGTCCTACAATTTCCCGAAGGTGGTTTCCGTGCTCACACTAAAGGTGCTTCAGAAATAGTATTGGCTGCCTGTGACAAGGTGCTCAACTCGAGTGGTGAGGTTGTTCCTTTAGATGAAGCTTCCATCAAGCACCTCAATCTTATTATCGATCAATTTGCTGGTGAAGCTCTCCGAACACTTTGCCTTGCCTACATGGAACTGGAAAATGGGTTCTCTGTCAACGATCCTATTCCATCCTCTGGTTATACCTGTATAGGTATTGTGGGTATTAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATTACTGTACGAATGGTTACTGGTGACAATATCAATACTGCAAAAGCTATTGCTAGGGAATGTGGAATTCTTACCGATGATGGTATAGCCATTGAGGGTCCAGATTTCAGAGAGAAGACTCAAGAGGAATTGTTGAAAATTATTCCCAAAATTCAGGTGATGGCTCGATCTTCACCTCTAGATAAGCACACTCTGGTCAAGCATTTGCGGACCACCTTTGATGAAGTTGTTGCAGTTACTGGCGATGGGACAAACGATGCTCCTGCACTTCATGAAGCAGATATTGGACTAGCAATGGGCATTGCTGGAACTGAGGTCGCCAAAGAGAGTGCTGATGTGATCATTCTTGATGATAATTTCTCTACAATAGTGACTGTGGGAAAATGGGGTCGTTCCGTTTACATAAATATTCAAAAGTTTGTGCAATTCCAGCTGACTGTTAACATCGTGGCATTGATCGTAAACTTCTCTTCAGCTTGTGTAACAGGTAATGCCCCTCTTACTGCAGTCCAGCTCTTGTGGGTGAACATGATTATGGATACACTTGGAGCGCTGGCTCTCGCCACTGAGCCTCCAAATGATGGCTTGATGAAGCGCTTACCTGTTGGGAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAACATCTTGGGCCAGTCCTTGTATCAGTTCATAGTGATATGGTATTTACAGGCCAGAGGGAAAACAGCGTTTGAGCTAGACGGCCCTGATTCTGATCTGATACTGAATACCCTCATCTTCAATTCCTTTGTGTTCTGTCAGATCTTTAACGAAATAAGTTCCAGGGAGATGGACAAAATCGATGTCTTCAAAGGCATACTCAATAACTATGTGTTTGTAGCTGTGATTGGTTCCACCGTGGTCTTCCAAATAATCATCATCGAATTCCTGGGAACATTTGCAAGCACAACCCCTCTGACAATGTCGCAGTGGCTGTTTAGCGTGGTGATTGGATTTCTAGGCATGCCAATTGCTGCTGTCTTGAAGACTATTCCAGTATAA | 3045 | 43.68 | MERFLEENFGGVKPKNSSEEVLQRWRELCGVVKNPKRRFRFTANLSKRGEAAAMRQNNQEKLRIAVLVSKAAFQFIQGVQPSDYTVPEEVKAAGFHICADELGSIVEGHDPKKFKYHGGVEGIAQKLCTSTTNGLNGDADALNRRQDIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYDLLPGDIVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAENPYLLSGTKVQDGSCKMMVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLVSHKLREGTLWSWSGDEALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATSICSDKTGTITTNHMTVVKSFICMNVKETSNNPSSICADLPASVIKLLLQSIFNNTGGEVVINKDGKRELLGTPTETALLEFGLSLGGDFQAERQAGKLIKVEPFNSLKKRMGVVLQFPEGGFRAHTKGASEIVLAACDKVLNSSGEVVPLDEASIKHLNLIIDQFAGEALRTLCLAYMELENGFSVNDPIPSSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIARECGILTDDGIAIEGPDFREKTQEELLKIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACVTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDGLMKRLPVGRRGSFISNVMWRNILGQSLYQFIVIWYLQARGKTAFELDGPDSDLILNTLIFNSFVFCQIFNEISSREMDKIDVFKGILNNYVFVAVIGSTVVFQIIIIEFLGTFASTTPLTMSQWLFSVVIGFLGMPIAAVLKTIPV | 1014 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 7934281 | 7939459 | - | Maker00012617 | Lcy1g0909 | 622821 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g0909 | 1014 | Pfam | Cation transport ATPase (P-type) | 513 | 591 | - | - | |
| Lcy1g0909 | 1014 | Gene3D | - | 450 | 798 | IPR023214 | - | |
| Lcy1g0909 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 753 | 769 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy1g0909 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 785 | 810 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy1g0909 | 1014 | PRINTS | H+-transporting ATPase (proton pump) signature | 609 | 627 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy1g0909 | 1014 | Pfam | Cation transporting ATPase, C-terminus | 838 | 1011 | IPR006068 | - | |
| Lcy1g0909 | 1014 | Gene3D | - | 463 | 657 | IPR023299 | GO:0000166(InterPro) | |
| Lcy1g0909 | 1014 | PANTHER | CATION TRANSPORTING ATPASE | 77 | 1014 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Lcy1g0909 | 1014 | FunFam | Calcium-transporting ATPase | 646 | 798 | - | - | |
| Lcy1g0909 | 1014 | Pfam | Cation transporter/ATPase, N-terminus | 116 | 185 | IPR004014 | - | |
| Lcy1g0909 | 1014 | Pfam | E1-E2 ATPase | 236 | 432 | - | - | |
| Lcy1g0909 | 1014 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 455 | 461 | IPR018303 | - | |
| Lcy1g0909 | 1014 | FunFam | Calcium-transporting ATPase | 216 | 336 | - | - | |
| Lcy1g0909 | 1014 | FunFam | Calcium-transporting ATPase | 463 | 657 | - | - | |
| Lcy1g0909 | 1014 | Gene3D | - | 140 | 336 | - | - | |
| Lcy1g0909 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 650 | 661 | - | - | |
| Lcy1g0909 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 453 | 467 | - | - | |
| Lcy1g0909 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 672 | 682 | - | - | |
| Lcy1g0909 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 284 | 298 | - | - | |
| Lcy1g0909 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 777 | 789 | - | - | |
| Lcy1g0909 | 1014 | PRINTS | P-type cation-transporting ATPase superfamily signature | 753 | 772 | - | - | |
| Lcy1g0909 | 1014 | SUPERFAMILY | HAD-like | 452 | 858 | IPR036412 | - | |
| Lcy1g0909 | 1014 | SUPERFAMILY | Calcium ATPase, transduction domain A | 239 | 333 | IPR008250 | - | |
| Lcy1g0909 | 1014 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 116 | 1013 | IPR023298 | - | |
| Lcy1g0909 | 1014 | CDD | P-type_ATPase_Ca_PMCA-like | 142 | 886 | - | - | |
| Lcy1g0909 | 1014 | NCBIfam | HAD-IC family P-type ATPase | 386 | 479 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy1g0909 | 1014 | NCBIfam | HAD-IC family P-type ATPase | 719 | 835 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy1g0909 | 1014 | NCBIfam | HAD-IC family P-type ATPase | 205 | 375 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Lcy1g0909 | 1014 | Pfam | haloacid dehalogenase-like hydrolase | 648 | 767 | - | - | |
| Lcy1g0909 | 1014 | Gene3D | - | 17 | 77 | - | - | |
| Lcy1g0909 | 1014 | FunFam | Calcium-transporting ATPase | 770 | 1014 | - | - | |
| Lcy1g0909 | 1014 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 113 | 1014 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Lcy1g0909 | 1014 | SFLD | C1.7: P-type atpase like | 435 | 805 | - | - | |
| Lcy1g0909 | 1014 | Gene3D | - | 168 | 1011 | - | - | |
| Lcy1g0909 | 1014 | SMART | Cation_ATPase_N_a_2 | 114 | 190 | IPR004014 | - | |
| Lcy1g0909 | 1014 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 5 | 50 | IPR024750 | GO:0005516(InterPro) | |
| Lcy1g0909 | 1014 | SFLD | p-type atpase | 435 | 805 | IPR044492 | - | |
| Lcy1g0909 | 1014 | FunFam | Calcium-transporting ATPase | 17 | 77 | - | - | |
| Lcy1g0909 | 1014 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 459 | 662 | IPR023299 | GO:0000166(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy11g0558 | Lcy-Chr11:13665440 | Lcy1g0909 | Lcy-Chr1:7934281 | 0 | dispersed | |
| Lcy1g0909 | Lcy-Chr1:7934281 | Lcy4g1594 | Lcy-Chr4:40186691 | 4.38E-275 | dispersed | |
| Lcy3g2302 | Lcy-Chr3:49898539 | Lcy1g0909 | Lcy-Chr1:7934281 | 1.17E-270 | transposed | |
| Lcy1g0909 | Lcy-Chr1:7934281 | Lcy13g2145 | Lcy-Chr13:40328862 | 4.83E-64 | wgd | |
| Lcy1g0909 | Lcy-Chr1:7934281 | Lcy9g2037 | Lcy-Chr9:45244753 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy1g0909 | K01537 | - | csv:101212315 | 1878.22 |