Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0914 ATGGGGAAGAAACAGCACAGCAAAGACCGTTTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAATCCAAGCACTCTCAAACCCCTTTCAAACGGCTTCCTTTCTATTGCTGCGCGCTTACATTTACGCCCTTTGAGGACCCTGTATGTACTGCCGATGGCAGCGTCTTCGAGATAATGAATATCATCCCTTATATCCGAAAGTACGGTAAAAATCCTGTTACTGGAGCTCCCCTGAAGCAGGAGGATCTAATTCCACTGACTTTCCACAAGAATTCTGAAGGTGAGTTCCAGTGCCCTGTTCTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAAACCACTGGAAATGTCTTTTGTTACGAGGCAATTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTAACTGATGAACCATTTAGTAGGGAAGATATTATAACCATTCAGAACCCTACTGCGCTTGATAGTAAGGTTCTCCTGGATTTTGATCATGTGAAAAATAGCCTGAAAGTTGATGATGAAGAGCTTCAGAAAATGAAATCAGACCCAACATATAACATAAATGTATCGGGGGACATCAAGCAGATGCTGAAGGAACTTGGAACCGAAAAAGGAAGACAAACTGCCCTTCATGGGGGAGGTGGTGGCAAGGCACAGAAAGAAAGGGCAGCTGCTCTTGCTGCAATTTTAGATGCTAGGTCACGCATTAAAGAGGATTCCAAGGAAAACGCAAAAGGAGAGGAGAAACCTACTCAGGCATTTAGTATTGTGGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCAAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTGAATGCTAAGATGGTAAAGAGTCGTTATACTACTGGTGCTGCATCTCGATCCTTCACATCTACAGCTTATGATCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAATCCAAAGAAGAAAGGATACGTACAGTTGCATACAACACATGGAGATTTGAATATTGAGCTGCATTGTGATATTACTCCAAGGGCATGCGAGAATTTCATCACACTGTGTGAAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAATATTAGGAATTTTATGATTCAAGGTGGCGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTCAACTCCAAGTTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTCTTTATTCTGTACAAATCTGCCAATCATTTAAACTTCAAGCATACTGTATTTGGCGGTGTTGTTGGTGGTTTGACTACTTTGGCAGCAATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACAAGTGTCACAGTTTTTGTCAATCCATACTCAGAACCCGATGAAGGAGACGAAGAAAAGCAAAAAGACGAGAAGAATGTTGAAGATGAAGAAAACGATAAGGTTGGATCATGGTATAGTAACCCAGGCACTGGGGTAGCCGAAAATGGAGCTGCTGGTGGTGGTGTAGGGAAATATTTGAAAGCAAGGAATGCCCAATCCAAATCCTCTGCTGTCAATGCTAGTCTAAGAGAACCTACCTCGACAAAGAAAAGGACAGCTGCAGGAGAATTCAAAGACTTCTCTTCGTGGTAA 1782 42.76 MGKKQHSKDRLFITKTEWATEWGGAKSKHSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGAPLKQEDLIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAIKELNIKTKNWKELLTDEPFSREDIITIQNPTALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLKELGTEKGRQTALHGGGGGKAQKERAAALAAILDARSRIKEDSKENAKGEEKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTAYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCENGYYNGVAFHRNIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTTLAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEGDEEKQKDEKNVEDEENDKVGSWYSNPGTGVAENGAAGGGVGKYLKARNAQSKSSAVNASLREPTSTKKRTAAGEFKDFSSW 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7966590 7971135 + Maker00012250 Lcy1g0914 622826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0914 593 MobiDBLite consensus disorder prediction 504 593 - -
Lcy1g0914 593 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 339 510 IPR044666 GO:0000209(PANTHER)|GO:0061630(PANTHER)|GO:0071013(PANTHER)
Lcy1g0914 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy1g0914 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy1g0914 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy1g0914 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy1g0914 593 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy1g0914 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Lcy1g0914 593 MobiDBLite consensus disorder prediction 559 578 - -
Lcy1g0914 593 MobiDBLite consensus disorder prediction 509 531 - -
Lcy1g0914 593 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g0914 593 SUPERFAMILY RING/U-box 37 104 - -
Lcy1g0914 593 CDD cyclophilin_RING 350 508 - -
Lcy1g0914 593 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy1g0914 593 MobiDBLite consensus disorder prediction 212 232 - -
Lcy1g0914 593 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 516 - -
Lcy1g0914 593 SUPERFAMILY Cyclophilin-like 350 509 IPR029000 -
Lcy1g0914 593 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Lcy1g0914 593 Gene3D - 330 514 IPR029000 -
Lcy1g0914 593 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Lcy1g0914 593 SMART Ubox_2 39 101 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g0914 593 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Lcy1g0914 593 Pfam U-box domain 39 91 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Lcy1g0914 593 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1908 Lcy-Chr11:42798551 Lcy1g0914 Lcy-Chr1:7966590 3.23E-56 dispersed
Lcy1g0914 Lcy-Chr1:7966590 Lcy5g0439 Lcy-Chr5:4593031 1.92E-45 dispersed
Lcy1g0914 Lcy-Chr1:7966590 Lcy3g1104 Lcy-Chr3:35947297 1.90E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0914 K10598 - csv:101204462 1050.43