Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0915 ATGGATACCTTGTTTCGGCTTGTCAATCTCCAATCTGATCAATCTTACAACTCCAGCAGAACCAATTCTAGCAGCTCTAGATCTTCTAGACAAAACCAATATCATTACCATCAAAACGAAGACGAAGAATGCTACAACCTTCTCATGGATGAGGAAGATTTCTCTTCGTCTAGTAATTCTAGACAATACTATAATCCCTACCATCCCCACCCACCCTCCACCGCCACCGCCTCTACCACCCCCACCGTCACCACCCCAACGCCGATCGACCAATTTTCGTTCGTCTCCCCCTCTCCGGACTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTTGAAACCGCCAGGGCTATTTCTGACAGGAACAGCGCTCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGAGATACGGATCAAAAGCTCGCAGCCTACTTCCTGCAGGCCTTGTTTAGCCGCATGACAGATTCCGGCGACCGTAATTATCGCGCTTTGGCCTCGGCCTCAGAGAAAACATGCTCGTTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGCCATGTTTCTTGCAATGGCGCATTGATTGAAGCCTTAGAAGGAGAATCGAAGCTACACATAATCGATATCAGCAACACGTATTGCACTCAGTGGCCGACTTTGCTAGAAGCCCTCGCGACTCGTACCGATGACACGCCGCACCTTCGCCTCACGACGGTCGTCACCACCAAGCCCGGTGGTGGCACCGGCGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCAATACGCTGTACCATTCCGGTGACCTTTCGGAATTGGACTTTGCCAAATTAGACATCAAAGAAGACGAGGCACTCGCCATCAACTGCGTTGGAGCTTTACGTTCCGTGGCGGCGATTAATAACCGCCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTGCGGCCGCGGATAATCACGGTGATAGAAGAGGAAGCCGATCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTATTTTGAGACATTGGACGAGAGTTTCACGAGGACGAGCAACGAGCGGTTGATGCTTGAGAGAGCGGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCGGCGGAGTCGGTGGAGAGGCGGGAATCGGCGGCGCGGTGGGCACAGCGGCTGCATGGAAGCGGATTCGGTCCGGTGACGTTCAGCGACGAAGTATGCGACGACGTGAGGGCGCTGTTGAGAAGGTACAAGGAAGGATGGGCAATGACACAGAGCTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1479 52.06 MDTLFRLVNLQSDQSYNSSRTNSSSSRSSRQNQYHYHQNEDEECYNLLMDEEDFSSSSNSRQYYNPYHPHPPSTATASTTPTVTTPTPIDQFSFVSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPGGGTGVAASQKVMKEIGTRMEKFARLMGVPFKFNTLYHSGDLSELDFAKLDIKEDEALAINCVGALRSVAAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFLRGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7976198 7977676 + Maker00012525 Lcy1g0915 622827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0915 492 ProSiteProfiles GRAS family profile. 101 491 IPR005202 -
Lcy1g0915 492 MobiDBLite consensus disorder prediction 14 33 - -
Lcy1g0915 492 MobiDBLite consensus disorder prediction 56 84 - -
Lcy1g0915 492 MobiDBLite consensus disorder prediction 14 36 - -
Lcy1g0915 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 490 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Lcy1g0915 492 Pfam GRAS domain family 113 491 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0915 Lcy-Chr1:7976198 Lcy3g1226 Lcy-Chr3:37763433 2.50E-148 dispersed
Lcy1g0915 Lcy-Chr1:7976198 Lcy8g0721 Lcy-Chr8:26684055 8.50E-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19564 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0915 K27743 - csv:101204711 856.284