Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0925 ATGAGTTGCAACGGTTGCCGCGTTCTCCGAAAGGGCTGCAGCGAGTCCTGTATTCTTCGCCCTTGCTTGCAGTGGATCGACACCTCCGAAGCCCAAGGCCACGCTACTGTCTTCGTCGCCAAGTTCTTCGGCCGCGCTGGTCTCATGTCCTTCATCTCCGCCGTCCCTCAATCTCAGAGACCTTCTTTGTTTCAGTCTTTGTTGTTTGAAGCCTGCGGACGCACCGTCAATCCGGTCAACGGCGCCGTCGGCCTTCTCTGGACTGGCAACTGGCATATCTGTCAGGCGGCGGTCGAGACCGTGTTGCGAGGCGGCACGTTGAGGCCGATGAACGAATTCCTCGCCGCTGGATCTCCCAATCTGGCCTCCGACGAGACCTCCGAGGCTGAAGTCGCCTGTACCGACATGTGGAAGCTTCGAGATTCTTATCCCAATTCCCGATTCTCCAACTCCCGATCCCGGCTCTCCCCGAAACGCAAGCGATCCGAGGAATCCACCAAGAACCAACTGAACGACCTGGATCTCCGCTTGACGCCGAATTTTCCGGCGAAATCAACCCGGCGGGCGGCTACTCCGTCCATGAATTCCGAGGAATCCGAGACCACCACGTGCTTCGAAAGCGGCCTGGGAGATCATCATCATCATCTGCAGCAGCACTACTATCTAGAAGAAGCGGCCGGCGAAAGGAAGCTTCTGAATTTGTTCGTGTGA 711 57.24 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPQSQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVETVLRGGTLRPMNEFLAAGSPNLASDETSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESTKNQLNDLDLRLTPNFPAKSTRRAATPSMNSEESETTTCFESGLGDHHHHLQQHYYLEEAAGERKLLNLFV 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8066962 8068658 + Maker00012960 Lcy1g0925 622837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0925 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lcy1g0925 236 MobiDBLite consensus disorder prediction 184 204 - -
Lcy1g0925 236 Pfam Lateral organ boundaries (LOB) domain 2 100 IPR004883 -
Lcy1g0925 236 MobiDBLite consensus disorder prediction 156 170 - -
Lcy1g0925 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 223 - GO:0010468(PANTHER)
Lcy1g0925 236 MobiDBLite consensus disorder prediction 146 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0925 Lcy-Chr1:8066962 Lcy7g0468 Lcy-Chr7:4153870 2.77E-46 dispersed
Lcy1g0925 Lcy-Chr1:8066962 Lcy9g2044 Lcy-Chr9:45312270 4.04E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19567 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0925 - - - 0.0