Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0926 ATGATGCAATTCAGCGAGACCCCCCCACGGTTGCATCAAACGCAAACCACGACGCCTAGGATTTCTTCTTCTTCTCCTTCTTCTTCTTCTTCGTTTCCAGAGATCTCTATGAATAATAATCATAATAAAAACTACCAGATTGCGACTAGGCGGCCATGGCCTGGATTATTCCCTTGTTCCTCCAAGGCTCTTGGCAGTTGCTTCGGCGACGCCAATTGCATGGAACAGTTGTTGGTTCACTGTGCCAACGCCATCGAATCCAACGACGCCACTCTCTCCCAACAAATCCTTTGGGTCCTCAACAACATTGCCCCTCCCGATGGCGACTCCAACCAACGCCTCACTTCCGCCTTCCTACGCGCTCTCGTCTCACGCGCCGCCAACACCGGCAGCTGCAAGATCCTCGCCGCCATCACCACCACCACCGCCGCCTCCCTCACCACCCACACCTTCTCCCTCATGGACCTCGCCGCCTTCGTCGACTTGACCCCCTGGCACCGCTTTGGCTTCACCGCCGCCAATGCCGCCATCCTCGACGCCGTCGAGGGCTACTCCGCCATCCACGTCGTCGATTTCAGCCTGATGCATTGCATGCAAATCCCCACTCTCATCGACGCAATTGCCACTCGGTTCGAGGTCCCCCCTCTACTGAAACTGACCACCGTCTCGGCCGCCGTAAAAGACGCGCCGCCCATGCTGGAGCTGTCGTACGACGAATTAGGTGCGAAATTGGTGAACTTCGCGAGGTCTAAAAACGTGAGTATGGAATTTAGAGTGGTCCCGTCTTGCTACACAGACGGTTTCGCCAATTTAATCGAACAAATCCGAGTGCAACACTTAATTTACGGACCCGAAAATAACGAAGCGCTGGTTTTGAACTGCCACATGATGCTCCACTACATCCCCGACGAAACGCTAAACCCAAACCCTTCTCCCAATTTCGACATCTCCTCTTCCATTCGATCCATGTTTCTCAAGGCAATCCGTACCTTAGACCCAACCATCGTCATCCTCGTCGACGAAGACGCCGATTTCACCTCCACCAAATTGGTTACCCGATTGAGATCCGCCTTTAATTACCTTTGGATTCCCTACGACTCCATGGATTCCTTTCTTCCCAGGAGCAGCAATCAGAGGGAGTGGTACGAGGCCGACATTTGCTGGAAGATTGAGAATGTCATTGCTCACGAAGGGATTCAGAGAGTCGAACGATTGGAGCCCAAGGGGCGGTGGGTTCAACGGATGGTTAACTCCAAATTCCGAGGGGTTCCGTTCGGAGACGACGCCGTTTCTGAGGTGAAGACGATGCTGGACGAGCATGCAGCGGGATGGGGGTTGAAGAAGGAAGACGAACACCTCCTCCTCACGTGGAAAGGCCACGACGTGGTTTTCGCCACCGCCTGGGTACCTTGCTAA 1416 54.03 MMQFSETPPRLHQTQTTTPRISSSSPSSSSSFPEISMNNNHNKNYQIATRRPWPGLFPCSSKALGSCFGDANCMEQLLVHCANAIESNDATLSQQILWVLNNIAPPDGDSNQRLTSAFLRALVSRAANTGSCKILAAITTTTAASLTTHTFSLMDLAAFVDLTPWHRFGFTAANAAILDAVEGYSAIHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVSAAVKDAPPMLELSYDELGAKLVNFARSKNVSMEFRVVPSCYTDGFANLIEQIRVQHLIYGPENNEALVLNCHMMLHYIPDETLNPNPSPNFDISSSIRSMFLKAIRTLDPTIVILVDEDADFTSTKLVTRLRSAFNYLWIPYDSMDSFLPRSSNQREWYEADICWKIENVIAHEGIQRVERLEPKGRWVQRMVNSKFRGVPFGDDAVSEVKTMLDEHAAGWGLKKEDEHLLLTWKGHDVVFATAWVPC 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8082961 8084376 + Maker00013501 Lcy1g0926 622838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0926 471 MobiDBLite consensus disorder prediction 1 36 - -
Lcy1g0926 471 Pfam GRAS domain family 74 468 IPR005202 -
Lcy1g0926 471 ProSiteProfiles GRAS family profile. 65 469 IPR005202 -
Lcy1g0926 471 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 468 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0926 Lcy-Chr1:8082961 Lcy4g0590 Lcy-Chr4:7117271 2.04E-117 dispersed
Lcy1g0926 Lcy-Chr1:8082961 Lcy8g0721 Lcy-Chr8:26684055 2.21E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19568 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0926 - - - 0.0