Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0927 ATGGGTCGCTTCAATCTCCTTATTGCACTCTCTCTTCTTTCCCTCTTCTTCTTCCCTTCCCCTACTCTGGCCCAACTCCGACAAAACTTCTACTCCAATATCTGCCCAAATGTCGAAAGCATTGTCCGCACCGAGGTTACCAAAAAATTTCAACAAACTTTCGTCACTGTTCCGGCCACTCTCCGCCTCTTCTTCCACGATTGCTTCGTTCAGGGATGTGATGCCTCGGTGATTATTGCTTCCACCGCATCCAACAAGGCCGAGAAGGACCATCCCGATAACCTCTCCTTGGCCGGAGATGGATTTGACACCGTCATCAAGGCTAAAGCCGCCATCGACGCCATCCCTCAATGCCGAAACAGAGTCTCCTGTGCGGATATTCTCACTATGGCCACTCGGGATGTCATCGCACTCGTCAGTTCCGGCGGACCGTCGTACGCGGTGGAGCTGGGAAGGTTAGACGGCCTGGTTTCCAGAGCCTCCGACGTGAACGGGAGACTCCCGGCGCCGACCTTTAATCTCAATCAGCTCAATTCTCTGTTTGCTGCTAATGGGCTTACACAACAAGACATGATCGCTCTCTCAGCGGCTCACACCGTCGGATTTTCGCACTGCGGGAAGTTCTCAAACCGAATTTACAGCTTTGCCCCTGGGAGACCGGTGGACCCCTCACTAAACAGAACGTATGCGACCCAGCTACAACAGATGTGCCCGAGGAACGTGGACCCGAGAGTGGCGATCAACATGGACCCCATCACGCCCAGAGCCTTTGACAACATATACTTCAGAAACCTCCAGCAGGGAATGGGCCTGTTCACGTCGGACCAGGTTCTGTTCACCGACGGCAGGTCCAGGCCCACAGTGAACGCGTGGGCCAGCAACTCCCAGGCCTTCAATAAGGCCTTTATTGAAGCCATGACTAAATTGGGCCGGGTCGGCGTCAAGACCGGTAGAAACGGGAACATTCGACGCGATTGTGGAGCTTTCAATTGA 993 53.98 MGRFNLLIALSLLSLFFFPSPTLAQLRQNFYSNICPNVESIVRTEVTKKFQQTFVTVPATLRLFFHDCFVQGCDASVIIASTASNKAEKDHPDNLSLAGDGFDTVIKAKAAIDAIPQCRNRVSCADILTMATRDVIALVSSGGPSYAVELGRLDGLVSRASDVNGRLPAPTFNLNQLNSLFAANGLTQQDMIALSAAHTVGFSHCGKFSNRIYSFAPGRPVDPSLNRTYATQLQQMCPRNVDPRVAINMDPITPRAFDNIYFRNLQQGMGLFTSDQVLFTDGRSRPTVNAWASNSQAFNKAFIEAMTKLGRVGVKTGRNGNIRRDCGAFN 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8088146 8090332 - Maker00013033 Lcy1g0927 622839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0927 330 Gene3D - 29 330 - -
Lcy1g0927 330 Gene3D Peroxidase, domain 2 168 309 - -
Lcy1g0927 330 ProSiteProfiles Plant heme peroxidase family profile. 25 330 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Plant peroxidase signature 142 157 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Lcy1g0927 330 CDD secretory_peroxidase 25 329 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy1g0927 330 FunFam Peroxidase 29 176 - -
Lcy1g0927 330 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 PANTHER - 13 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 FunFam Peroxidase 168 309 - -
Lcy1g0927 330 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Lcy1g0927 330 Pfam Peroxidase 42 294 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g0927 330 SUPERFAMILY Heme-dependent peroxidases 25 330 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g2285 Lcy-Chr10:46514000 Lcy1g0927 Lcy-Chr1:8088146 1.37E-140 dispersed
Lcy10g2286 Lcy-Chr10:46518921 Lcy1g0927 Lcy-Chr1:8088146 4.26E-143 dispersed
Lcy1g0927 Lcy-Chr1:8088146 Lcy9g1774 Lcy-Chr9:42933856 7.00E-134 dispersed
Lcy1g0927 Lcy-Chr1:8088146 Lcy8g0730 Lcy-Chr8:26949638 5.03E-178 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0927 K00430 - csv:101206860 602.438