Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0936 ATGGCGAAGCCGCTTTGGATTCTTCTACTTCTCTGTTTCTTCTCTAGGCCGTCAATGGCTGTTCCAGACAAGAAGACTTACATCGTGCATATGGCCAAGTACCAAATGCCGGAGAGTTTTGAGCACCATTTGCACTGGTATGACTCGTCCCTCAAATCCGTCTCCGATACGGCGGAGATGATCTATGCTTACAACAACGTCGTTCATGGGTTTTCAACCAGATTGACGGCGGAGGAAGCTCAGCGCCTGGAGTCCCAACCTGGGATTTTGGCTGTGGTGCCGGAGATGAGATATGAACTTCATACCACTCGTACTCCTCAGTTTCTTGGACTTGACAAGAATGCAGATCTGTACCCTGAATCGACCTCAGTATCGGAGGTGATCATCGGAGTTTTGGATACCGGGGTTTGGCCGGAGAGTAAGAGCTTCGACGATACTGGGCTTGGACCGGTGCCGAGTAGCTGGAAGGGTGAGTGTGAATCCGGTACTAATTTCAGTGCGTCGAACTGTAACAGGAAGCTGATCGGAGCGAGGTATTTTTCCAAGGGCTACGAGGCGACTCTCGGTCCGATCGATGAATCCAAAGAATCGAGATCTCCGAGAGACGACGACGGCCATGGAACCCACACCGCAACCACTGCCGCCGGTTCTGTAGTGGAAAACGCCAGCCTATTTGGCTACGCCTCTGGCACCGCCCGTGGGATGGCTGCACGTGCGAGGGTCGCTGCCTATAAGGTCTGTTGGGCCGGCGGATGTTTCAGCTCCGACATCTTGGCAGCCATTGAAAAAGCTGTGGAGGACAATGTTAATGTCCTTTCCATGTCGCTCGGCGGTGGAATATCCGACTATTACAAAGACAGCGTTGCCTCCGGAGCCTTCGCCGCCATGGAGAAAGGCATCCTCATTTCTTGCTCCGCCGGAAATGCGGGCCCCAGCCCTTACAGCTTGTCGAATACGTCTCCATGGATCACAACCGTCGGTGCCGGAACATTAGATCGCGATTTTCCGGCGTACGTCAGTCTCGGCGACGGCAAAAACTTCTCCGGTGTTTCGCTCTATCGAGGCAAGCCATTGCCGGGAACCTTGTTGCCTTTTATTTACGCCGCTAATGCGAGTAACTCTGCTAATGGCAATTTGTGTATGACCGGTACTTTGATCCCTGAAAAAGTTGCCGGAAAAATCGTGTTCTGTGACCGAGGTGTAAATCCTAGGGTTCAGAAAGGGGCGGTCGTCAAAGCCGCAGGTGGAATCGGAATGGTGTTGGCCAACACCGCCGCAAACGGAGAAGAGTTGGTGGCCGACTCTCATCTTCTGCCGGCCACGGCGGTGGGTCAGAATTTCGGCGACATTATACGGAAGTATCTGATTTCGGAGCCGAAACCGACGGTGACGATCTTATTCGAAGGTACAAAATTGGGGATCCAACCGTCGCCGGTGGTGGCGGCTTTCAGTTCCCGGGGACCCAATTCGATCACTCCTCAGTTGCTGAAGCCCGACATAATCGCTCCTGGTGTCAACATTTTAGCTGGATGGTCAAAATCAGTGGGGCCGAGTGGTTTAGCCATTGATGACAGAAGAGTGGATTTCAACATTATCTCTGGCACCTCCATGTCCTGCCCCCATGTGAGCGGTCTCGCCGCCCTAATCAAAGGGGCTCATCCCGACTGGAGCCCGGCGGCGATTCGTTCGGCGTTGATGACGACGGCCTACACAGCCTACAAAAACGGCCAGAAGATCCAAGATACCGCCACCGGAAAACCGTCCACGCCATTCGATCACGGAGCCGGACACGTCGATCCAGTATCAGCCCTCAATCCGGGTCTTGTTTACGATCTAACGGTGGACGATTACCTGAACTTCCTCTGTGCACTTAACTACACTTCGTCGCAGATCAACTCACTGGCGAGGAGAGATTTCACTTGCGACTCCGGGAAGAAGTACAGTGTCAACGATCTCAACTACCCTTCTTTCGCCGTCGTTTTCGACGGCGTATTAGGCGGAGGTTCCAGTGTAGTCAAGCACACCAGAACTCTTACAAACGTCGGCTCTCCAGGAACATACAAAGTCTCAATCTCGTCGGAGACCAAGCTGGTGAAAATCTCCGTCGAGCCAGAATCTTTAAGCTTCACCGAAGCCAATGAGAAGAAGTCGTACACAGTCACATTCACCACCGCAACTGGTTCGGCGGCGCCGCCGAGCGCGGAGGGGTTCGGTAGAATTGAGTGGTCGGACGGGAAGCACGTGGTGGGAAGTCCGATTGCGTTTAGTTGGACGTAG 2277 53.54 MAKPLWILLLLCFFSRPSMAVPDKKTYIVHMAKYQMPESFEHHLHWYDSSLKSVSDTAEMIYAYNNVVHGFSTRLTAEEAQRLESQPGILAVVPEMRYELHTTRTPQFLGLDKNADLYPESTSVSEVIIGVLDTGVWPESKSFDDTGLGPVPSSWKGECESGTNFSASNCNRKLIGARYFSKGYEATLGPIDESKESRSPRDDDGHGTHTATTAAGSVVENASLFGYASGTARGMAARARVAAYKVCWAGGCFSSDILAAIEKAVEDNVNVLSMSLGGGISDYYKDSVASGAFAAMEKGILISCSAGNAGPSPYSLSNTSPWITTVGAGTLDRDFPAYVSLGDGKNFSGVSLYRGKPLPGTLLPFIYAANASNSANGNLCMTGTLIPEKVAGKIVFCDRGVNPRVQKGAVVKAAGGIGMVLANTAANGEELVADSHLLPATAVGQNFGDIIRKYLISEPKPTVTILFEGTKLGIQPSPVVAAFSSRGPNSITPQLLKPDIIAPGVNILAGWSKSVGPSGLAIDDRRVDFNIISGTSMSCPHVSGLAALIKGAHPDWSPAAIRSALMTTAYTAYKNGQKIQDTATGKPSTPFDHGAGHVDPVSALNPGLVYDLTVDDYLNFLCALNYTSSQINSLARRDFTCDSGKKYSVNDLNYPSFAVVFDGVLGGGSSVVKHTRTLTNVGSPGTYKVSISSETKLVKISVEPESLSFTEANEKKSYTVTFTTATGSAAPPSAEGFGRIEWSDGKHVVGSPIAFSWT 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8169958 8172234 + Maker00012804 Lcy1g0936 622848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0936 758 ProSitePatterns Serine proteases, subtilase family, serine active site. 534 544 IPR023828 -
Lcy1g0936 758 FunFam subtilisin-like protease SBT1.5 332 472 - -
Lcy1g0936 758 Pfam Fibronectin type-III domain 651 754 IPR041469 -
Lcy1g0936 758 SUPERFAMILY PA domain 375 452 IPR046450 -
Lcy1g0936 758 Gene3D - 621 757 - -
Lcy1g0936 758 CDD Peptidases_S8_3 98 570 IPR034197 -
Lcy1g0936 758 Gene3D Peptidase S8/S53 domain 127 617 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy1g0936 758 FunFam Subtilisin-like protease SBT1.5 126 347 - -
Lcy1g0936 758 Pfam PA domain 378 450 IPR003137 -
Lcy1g0936 758 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 16 101 IPR037045 -
Lcy1g0936 758 Pfam Subtilase family 126 580 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy1g0936 758 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 26 753 IPR045051 -
Lcy1g0936 758 ProSiteProfiles Serine proteases, subtilase domain profile. 97 604 - -
Lcy1g0936 758 Gene3D - 332 473 - -
Lcy1g0936 758 FunFam Subtilisin-like protease SBT1.9 15 101 - -
Lcy1g0936 758 Pfam Peptidase inhibitor I9 26 101 IPR010259 -
Lcy1g0936 758 CDD PA_subtilisin_like 338 465 - -
Lcy1g0936 758 MobiDBLite consensus disorder prediction 190 208 - -
Lcy1g0936 758 SUPERFAMILY Subtilisin-like 100 608 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy1g0936 758 PRINTS Subtilisin serine protease family (S8) signature 533 549 IPR015500 -
Lcy1g0936 758 PRINTS Subtilisin serine protease family (S8) signature 124 143 IPR015500 -
Lcy1g0936 758 PRINTS Subtilisin serine protease family (S8) signature 202 215 IPR015500 -
Lcy1g0936 758 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0936 Lcy-Chr1:8169958 Lcy2g0978 Lcy-Chr2:9124001 2.26E-286 dispersed
Lcy8g1248 Lcy-Chr8:39042713 Lcy1g0936 Lcy-Chr1:8169958 3.98E-254 transposed
Lcy1g0936 Lcy-Chr1:8169958 Lcy13g2125 Lcy-Chr13:40144800 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0936 - - - 0.0